Array 1 859170-866477 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009511.1 Methanosarcina mazei SarPi chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 859170 37 100.0 35 ..................................... AAGTTTCTAGATGGAGATATAAGGCTCCAGTTAGA 859242 37 100.0 35 ..................................... CAAGCTTTCCATTTTTGATAGAGTAGTCATAAGGG 859314 37 100.0 36 ..................................... TAAAAGCTGATAAAACAGATCAATCATTGTATACAA 859387 37 100.0 35 ..................................... CAAATTCCATCTTTTCTTTTCGATTGTTTGATTTT 859459 37 100.0 39 ..................................... CAAATTCCATCTTTTCTTTTCGATTGTTTGATTTTTTGT 859535 37 100.0 35 ..................................... ATACTCATTTGCGTAACATTCGCCTACTGCTTGCT 859607 37 100.0 34 ..................................... ACGATGTTCAACGGTCATTGTACAGTTTTTGCAA 859678 37 100.0 36 ..................................... ATTCGTAATAGTATAGTATAGTAGTAAAATAGAACG 859751 37 100.0 37 ..................................... TACTGATGTTCTCGGCCAAAATGGGCTACCTCTCCCA 859825 37 100.0 39 ..................................... TATAGGGGCATGTTTTCAGTCCTCCTGCTTCGTTATCTA 859901 37 100.0 37 ..................................... CATATGAAGGAATCATACACCCTATATACATCATTTT 859975 37 100.0 35 ..................................... AAAAACATAAAGAAGAGTACTCACCTGAAGTGCAG 860047 37 100.0 37 ..................................... TAATACGCTTCATTTGTCCAGTATCAAATTGCAAAAG 860121 37 100.0 36 ..................................... ATCAGATTGTGAAAGAAACTCAGTTGTGTGAAAAAT 860194 37 100.0 35 ..................................... CACACTGCATTGCTTTCTCTCTGTATTCTTCATGT 860266 37 100.0 36 ..................................... TAGTATTTGTATGTACATCATAGATTTTAGCTATGG 860339 37 100.0 33 ..................................... TACTTAAGTGATAGACCATTACAGCCCCTAGTA 860409 37 100.0 34 ..................................... CAGGAGTAGTTTTCGAGGTCCATGTGTCTCCGTT 860480 37 100.0 35 ..................................... ACAACAACGACATACATTACGAACATAACAGCCAC 860552 37 100.0 34 ..................................... AAGACACTGGCGAAGGAAAAGACCAAAAAAACAG 860623 37 100.0 36 ..................................... TAAGAGTCCATGTTTGAAACTGTAAAGGACCCCTGG 860696 37 100.0 37 ..................................... AAATCTTCTATAGTTTCATATTCAATAACACCAACTA 860770 37 100.0 36 ..................................... AAGAAATGGAAAGACGAAGATAGAATAAAAGAAAAT 860843 37 100.0 35 ..................................... TATAAACAACTACAGCATATATTGTAGCTGCAAGT 860915 37 100.0 35 ..................................... CTTCTCACTCTCCTTTCTCTTTTCGTGTCTCTCTT 860987 37 100.0 34 ..................................... TAATTATGGACGGAGCAACACCAATTATAAGAAA 861058 37 100.0 40 ..................................... TTTAAAACTGGAAAAGAGCTTATAGTTGCAGCCCCAGGGT 861135 37 100.0 35 ..................................... ATTGAATGATCGGAGCCAAAAAATGAAAGTATTAG 861207 37 100.0 34 ..................................... AAAATACTAGAAGTAAAACGGGACTAAGATAATA 861278 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCTG 861349 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 861421 37 100.0 34 ..................................... CGAAGTGTGGGAAGAAGCGTATAAGAGAGCCGAA 861492 37 100.0 36 ..................................... ACATAATATTCAAAAAATAATATCACATCTGCAACT 861565 37 100.0 35 ..................................... TGTATTAAAAAAGGCTGGATGAATTTTAGAGATTT 861637 37 100.0 34 ..................................... TATCATTGATATAATATTAGTTTAATATGTTATG 861708 37 100.0 37 ..................................... ATCGTAGATGTCACATTCCCTCCAAAATTGTGGGAAG 861782 37 100.0 35 ..................................... ATATTTTATTTGGAGCTAGAGCCCTGTACCATCTA 861854 37 100.0 38 ..................................... CTAAGCTCTGAAAAAGATCCAGAAACTTCGGGGCAGGT 861929 37 100.0 35 ..................................... GACTCCCGGCATGGGCTTATAACTTTTCTTTTCAG 862001 37 100.0 36 ..................................... ACATACTCAAGTGCCTTTTTCTCAACGACAATAAGA 862074 37 100.0 36 ..................................... TTACGGGGTCAGAGACCAAAGTGGATATTATGATAA 862147 37 100.0 38 ..................................... ATCGCGTCAGTGGACACGCCCCCGCCCTTTTCTTTCCA 862222 37 100.0 35 ..................................... TTCTCAGGTGTTCGCCGGGAAATGAAGGACGGAAC 862294 37 100.0 35 ..................................... TAGCATTAAGTACTAGTACTAGTACTTAGAGAAAA 862366 37 100.0 36 ..................................... TTATAATAGTAACAATCTCATTATAAACCCCCACAG 862439 37 100.0 36 ..................................... TAAATTTGCAAGATCGAAAACTGCAATCTATGAAAC 862512 37 100.0 35 ..................................... TTACAGATATATATTATATATATATGTATTTCTTT 862584 37 100.0 35 ..................................... TGGATAGGTTATTTGAAATTGGAACTCAGAAAGAG 862656 37 100.0 37 ..................................... CCTTATTACCCTTAGATTTCTTCGCCAGGACCCTAAA 862730 37 100.0 34 ..................................... ATTACTTGCTTTTGAATGCTCCAAAACTCCAGAA 862801 37 100.0 37 ..................................... CAATAAGATTCCCATGTATGCCCAGGAGGTAGCTTAA 862875 37 100.0 34 ..................................... GGCTTTGATTATGGGTATGGATGGCGCATGTGGT 862946 37 100.0 36 ..................................... ATTTTGCTGCTGCTGTAACTGTTTCAATCATTAGCT 863019 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 863092 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 863164 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 863236 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 863308 37 100.0 37 ..................................... TTTGCAGAGCTTAGGGCAAATGGTGCGACTGATGAAA 863382 37 100.0 38 ..................................... TAAGCAGATGATGTAGTGCTTGTATTATCAGGTGACAG 863457 37 100.0 36 ..................................... TACTGATGATTTTAATGACATTGCTGACTCTGAAAA 863530 37 100.0 38 ..................................... ATGATTATGTTTTGTGTCTTGAGGATAAAAAGATAGCT 863605 37 100.0 35 ..................................... TTTATAAAGTTAAAGTAGAAACTAAATTTCAACCA 863677 37 100.0 36 ..................................... ATCTCATCTGGAACCCATATATTCATTCTCGGCATT 863750 37 100.0 36 ..................................... TAAAAAATTAAGAACGTTGTCATGCTCTCATGCCTC 863823 37 100.0 35 ..................................... ATAATGTTTTTGATGGCTGTTCAAATGCGGGGATT 863895 37 100.0 36 ..................................... TTAAATGACGTCCCTCCGAATATTAAGGTAAGTTCT 863968 37 100.0 37 ..................................... TAGAGTCTTACTTTTCTTCCACCAATGATAATTTCGT 864042 37 100.0 35 ..................................... CAGACAAAGCAGGAAGGAAGATTGAAACTCGTTCA 864114 37 100.0 35 ..................................... GAGTGTTTGAGGTTCAAGTCTGCCGGACATGCGGA 864186 37 100.0 36 ..................................... TCCAGTTGCGTCTATCGAAATCACAAACGAGATAAC 864259 37 100.0 36 ..................................... AACCACTCCCTCTTAAACATGTTTCCGTTTGCAATT 864332 37 100.0 34 ..................................... AAAAAATAGAATCCACTCAAACCGAAGCCCTGAA 864403 37 100.0 36 ..................................... AGATAGTCACGGTGTCTATCTTCCAGAATAACACAT 864476 37 100.0 35 ..................................... AAATATCAACTGCACATTCTTCCACAATATCATTC 864548 37 100.0 34 ..................................... TTTTTGATTTTTCTTCCGGCATGAAATCCTTGAT 864619 37 100.0 35 ..................................... ATAATTATGTTGAGTTGAGAGTGAATTCAGGTTGC 864691 37 100.0 37 ..................................... GAAAACAGGATTGAACGGGCTAAAGCATTGAAAGCTT 864765 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 864839 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 864910 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 864983 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 865057 37 100.0 36 ..................................... TTATTTTTGCCATGCCTGCCGCGTCTAATCCTATCC 865130 37 100.0 34 ..................................... TTATCCCGTGGTCCTCTTCGTCTACATTAATAGT 865201 37 100.0 38 ..................................... CACAGCTACCCGGACAGGGAAGTATAAGGACCTGGCAG 865276 37 100.0 35 ..................................... AATTTTGTGACATACCCCTGAAATTCATAGACTTC 865348 37 100.0 35 ..................................... AAGAATATAATACAAACAATCCTTATAACGAACTG 865420 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 865493 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 865565 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 865637 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 865709 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 865782 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 865860 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 865934 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 866007 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 866079 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 866151 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 866224 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 866296 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 866369 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 866441 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ========================================= ================== 101 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1508588-1518721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009511.1 Methanosarcina mazei SarPi chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1508588 37 100.0 36 ..................................... CGAGGGAAGGAACCACAAGAGCACAGGGAAATTATT 1508661 37 100.0 37 ..................................... TACATATACATATAATAAGTCTATAGGGTTTTTGCAC 1508735 37 100.0 34 ..................................... ATGTTTCTGCACAGTCACCCACTAGTATTTCGTT 1508806 37 100.0 37 ..................................... ATATTAGGCTTTGCAAAAGTACTTGGTACGCCCTTAT 1508880 37 100.0 38 ..................................... ATCGTAAATGTTATATTTTTCCAGAAGGGTTTTAAACT 1508955 37 100.0 36 ..................................... TGAAAATGATGGACCTTATCACAGCAGGGGAAAACC 1509028 37 100.0 35 ..................................... ACATATCCCCTGATTCTGATAATGTCAGAGGTTGA 1509100 37 100.0 35 ..................................... TTCCTCCTTATGCTCTAATAATAACAGACGAAACA 1509172 37 100.0 35 ..................................... ACATTTTTTTGTTGTTTTCTTTTTCTTTTTCTTGC 1509244 37 100.0 35 ..................................... AACTGCATTCATTTTTTTGAATGTGACAATATATC 1509316 37 100.0 34 ..................................... AATACAACATGAGCACAGCCAACAGGGAAATAAA 1509387 37 100.0 35 ..................................... AATAAAGGCGATAACATGAGAAACAATGCAAAATT 1509459 37 100.0 34 ..................................... GAGTTAACGTAGCGTCTTCATAAGAAGATGCAAT 1509530 37 100.0 34 ..................................... TACTCCTTATGCTCTAATAATCGCAGACGAAACA 1509601 37 100.0 37 ..................................... TTTCTGATATTATTAGCTATTTCTTTGATTTGAGTTA 1509675 37 100.0 35 ..................................... CTTGTAAAATCTACTCAGGATGCGCTGAAAAGCGT 1509747 37 100.0 35 ..................................... TTCTGAATATATTTTGCATCCTCTAGTGTGTTAAG 1509819 37 100.0 35 ..................................... ATATACTTTTCGTATCCTTGATCAATTGAATATCG 1509891 37 100.0 36 ..................................... TTATAGTTGGAGCTACATATGGATTCGTTAATTTTA 1509964 37 100.0 34 ..................................... TTATAAAAATCTTGAATATATTTACACTGTTGAA 1510035 37 100.0 36 ..................................... TATTCTATGATATCATTTTCCGAGATTGGTATTTTG 1510108 37 100.0 36 ..................................... TTGGGTTTCCGTCTCCATCTATGACCCCGGCTCTCT 1510181 37 100.0 37 ..................................... TATTTGTTGTACTCCTTTCTGTCAGGTTCTCTTTCTG 1510255 37 100.0 36 ..................................... CTTCTGCGAGGTTCTTATGCAGAAGTTCCTTTTCTG 1510328 37 100.0 35 ..................................... TCAAAACCGTTTCAATCCCTACTTCGTTAAGAGTG 1510400 37 100.0 35 ..................................... TATAGTAGTTTTGCGTATTAGAATATAGAAGTAAA 1510472 37 100.0 34 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAA 1510543 37 100.0 35 ..................................... CAAAAGGTTGCCAGGATACATATCTTGTACTCAGA 1510615 37 100.0 35 ..................................... AATTCGCACACTCAACAAAAAACGAACCCCTAGAG 1510687 37 100.0 35 ..................................... AAAATTATGTAACCAAATGAAAAAGGATATAAGAA 1510759 37 100.0 38 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAAAAA 1510834 37 100.0 39 ..................................... TATTTATCATCAGTTTTTTTAAGTTTCTTTCCCAATATT 1510910 37 100.0 35 ..................................... TAAGATACGCATCGTCACAAAATTCATAGATTTTC 1510982 37 100.0 35 ..................................... ATGCTCGGAGAAAGAGCCGAAACAGACGAAGGTTT 1511054 37 100.0 35 ..................................... CACATGGCTCTCTCTCTACCAACAACGCCCAAGCG 1511126 37 100.0 35 ..................................... AATGCGAATGGAAGCCCGTACATAATCCAGATATG 1511198 37 100.0 34 ..................................... TACAACATAGTTGCCATATCGTTTGAAGTATGAA 1511269 37 100.0 35 ..................................... TCAATCCATGATGCTCCGGTTTTGAATACTTTCCG 1511341 37 100.0 37 ..................................... TTTGTCGACTGATTAAATCTATCCGGTGAAGACCCGA 1511415 37 100.0 37 ..................................... ATCAATTATTTAATACATAATTAAATTGTATCCTGTT 1511489 37 100.0 35 ..................................... TGTATATCAACTCATCGAAAATATGGCAAAGGAGA 1511561 37 100.0 35 ..................................... GTTGTGATTTTTCCAACGTCTCTAAGATAATAAAA 1511633 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGCCCGGTCATTTTCTTA 1511706 37 100.0 37 ..................................... TTGGCTGTTAGTGGATCACTAACAGGAATGGTTAGCA 1511780 37 100.0 35 ..................................... ATAAGCCCTCCGCCCGTTCTGCCTTCTCTTACTCC 1511852 37 100.0 35 ..................................... TCAAGGACTTTGTAGAGCTGGAAGACACAGAAGAA 1511924 37 100.0 36 ..................................... CTGCAGTCTCATCTAGCATCAGGAAGTCTTTGACAT 1511997 37 100.0 35 ..................................... TTAAATTGTACACCCATGGTCCCAGCAATTTGTAA 1512069 37 100.0 37 ..................................... TCAAGGTCTTTTTTTGTGATGTAGAACACATCTTCTG 1512143 37 100.0 37 ..................................... CTAACTCGAACCTTCACTTGCGACTCGAACCTCACTT 1512217 37 100.0 36 ..................................... GTGAAGGTTCGAGCCGCAAGTAAAGGTGAGCCTGAG 1512290 37 100.0 35 ..................................... TTCTAAGCCTGTTTAAAAGCCTCTAATCCTGGGAG 1512362 37 100.0 37 ..................................... TACTAACACAAATAATTATTATATGTTAGGAAGAACA 1512436 37 100.0 36 ..................................... AAAATATAATCTCAGGCAGGCTTTAACAGTCTCCCT 1512509 37 100.0 35 ..................................... TCTAAGATCGGCTTTGCTAATGTTTCATCACTTGT 1512581 37 100.0 34 ..................................... ACAAGGTCTACGACTGTAAAGCCTTTTGAGAGGT 1512652 37 100.0 36 ..................................... ATTTTAACTTCTTTGCATTCTATTTTTTTCATGATA 1512725 37 100.0 36 ..................................... CTTCTTATTGATGGCGCTAATCTTCCTTCTTTTCGG 1512798 37 100.0 35 ..................................... TATATAGTCCTTCGATAACGATTATTTATACGTTT 1512870 37 100.0 35 ..................................... TAGATTCTAAAATGGTGTTTGTACATAGAACAGAT 1512942 37 100.0 33 ..................................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 1513012 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 1513084 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 1513159 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 1513232 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 1513306 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 1513377 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 1513451 37 100.0 33 ..................................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 1513521 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 1513593 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 1513668 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 1513741 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 1513815 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 1513886 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 1513960 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 1514034 37 100.0 35 ..................................... AGGAGATCCTTAGAATCTTTCCAAGTAGGCTGCTT 1514106 37 100.0 34 ..................................... AAACCTCTTGGAGCTCTGCATAGGTATCTATAAG 1514177 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 1514251 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 1514323 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 1514396 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 1514469 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 1514541 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 1514616 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 1514686 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 1514759 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 1514830 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 1514902 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 1514976 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 1515050 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 1515124 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 1515198 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 1515273 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 1515346 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 1515419 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 1515494 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 1515567 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 1515641 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 1515716 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 1515787 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 1515858 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 1515928 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 1516002 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 1516073 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 1516146 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 1516218 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 1516289 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 1516361 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 1516431 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 1516505 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 1516579 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 1516652 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 1516725 37 100.0 35 ..................................... GGGTATATAGTATGTTGTAGTAACGTAGGAGGAAA 1516797 37 100.0 36 ..................................... AATAGTGTATCTGTGACACTTACAACCGGCACTGAG 1516870 37 100.0 36 ..................................... TCGTGTCTTCTATGTCGGAAAAATAATCCTCATCGT 1516943 37 100.0 35 ..................................... TAATTCCAAGATCACCATGCCAGATGGCTCTAATC 1517015 37 100.0 34 ..................................... ACGTAATTGATGTATAACGATATACATTTTCCTT 1517086 37 100.0 35 ..................................... AGATTGATCTTACCATCTCCTATTATTGTAAGCAA 1517158 37 100.0 37 ..................................... TGTCTCCTCCAACGTGCATCACTTCTTCATACACTTT 1517232 37 100.0 36 ..................................... TCAAGAAGAGTAGTGCATTAAAACATCTAGAATCCA 1517305 37 100.0 36 ..................................... ACATCTTAAAAAACGCATTTGATAAATATGATGGGG 1517378 37 100.0 37 ..................................... TTCCGTCGATAATTACCAGGGCACGGAAGAGGACTGG 1517452 37 100.0 37 ..................................... TGTATGTACATGTCTCCGATCCTCATACTCAATAACG 1517526 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 1517599 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 1517672 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 1517746 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 1517819 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 1517893 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 1517963 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 1518034 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 1518105 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 1518179 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 1518252 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 1518323 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 1518395 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 1518466 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 1518539 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 1518612 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [1518617] 1518684 37 81.1 0 .G...A...T.GCT......................G | A [1518691] ========== ====== ====== ====== ===================================== ======================================= ================== 140 37 99.7 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATATTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAAGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAACAATCAAATTTAAATAGTCCATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGAGTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //