Array 1 31380-27393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINWG010000015.1 Rheinheimera aquimaris strain IOP_21 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31379 28 100.0 32 ............................ GTGCTGCCATGCGTATTAACTCTCCAATAAGC 31319 28 100.0 32 ............................ ATTTACGCGCTCAGTCCCTATTGGCATCCAGT 31259 28 100.0 32 ............................ AAAACGCCGGCGAGTTAGAGCAAGTGCTGGTA 31199 28 100.0 32 ............................ GTATAGCTCGGCCTCTAAGGGTGCTTTAATGT 31139 28 100.0 32 ............................ TTCAGCATGGGTAACGTAGGAGCTAAAAAGCT 31079 28 100.0 32 ............................ TTTTGCGCTTGTTTTCCAGCTTCAGTAATGCC 31019 28 100.0 32 ............................ TGCGCGTGGAAATCGCAAAGGAATACATCACC 30959 28 100.0 32 ............................ TTGCCATGGAGCTCCTGCAGGCGGGTAATGTC 30899 28 100.0 32 ............................ TTTCGTTGTACCAAACTCGAGTATTGTTAAAG 30839 28 100.0 32 ............................ TTTCAAGTTAGGGTTTAAGGTTAGTGATGCGT 30779 28 100.0 32 ............................ TTTAAGCCACCAATAGACTTATCCATCATTTG 30719 28 100.0 31 ............................ TCGACATTCACCAGGGCGAAATGGTGGCCAG 30660 28 100.0 32 ............................ TGCAGCGTGGCCAGACGTTCAGCCAGTATCGT 30600 28 100.0 32 ............................ GCATCAAAGGCACGCCCCTTGCCGTTAAAACC 30540 28 100.0 32 ............................ GGCGCGGGATTCCGCGAACTTCCGATCTTCAA 30480 28 100.0 32 ............................ AGCTGAGACCCATACACAGAGGCAATCTGGAA 30420 28 100.0 32 ............................ GAAGCGGAAACCTGGCACCAGCAACGGCTTAC 30360 28 100.0 32 ............................ CGCTACACCTGTAGATGGCGTCTGCCCTGAAC 30300 28 100.0 32 ............................ CTTGCCAGAAAGTTACACGCAATGGGGCATCA 30240 28 100.0 32 ............................ ACCCTGAAGAAAGCCACTCAGGCCGTCCCAGT 30180 28 100.0 32 ............................ GTCACCGCAAAGACCTTATGGAATTTGGCGTT 30120 28 100.0 32 ............................ GGAAAAACACCAGAGCGCTTACCCTCTGTAAT 30060 28 100.0 32 ............................ ATAAACGCCGCAGCATAGCGATTAGCTGAATC 30000 28 100.0 32 ............................ AGTCTAGTGGTCGGAATGTATCAGCCCAGAAT 29940 28 100.0 32 ............................ AGTTACCACCAGCCGTATTTAAAACAATGCTA 29880 28 100.0 32 ............................ GGCCTGAAAGTGCCGCCTGCGCCGTTACGTAA 29820 28 100.0 32 ............................ AAGCACTGGCACAGGTGTTGGAACTGGCGGTA 29760 28 100.0 32 ............................ GTCAGAGTAGTGCCGGCGTAATGGTAAACTCT 29700 28 100.0 32 ............................ TTTTCTGGGTCTGATTCAATAGAGTAGCCTTT 29640 28 100.0 32 ............................ AACTTGTGTAATTCTGCGTACATCTCGTACAT 29580 28 100.0 32 ............................ GATATCAAAAAAATCCTCATCGTTAAGGTTGA 29520 28 100.0 32 ............................ CTACTGAACTGTACAACTACACCTGGAAGGAT 29460 28 100.0 32 ............................ GATATCAAAAAAATCCTCATCGTTAAGGTTGA 29400 28 100.0 32 ............................ CTACTGAACTGTACAACTACACCTGGAAGGAA 29340 28 100.0 32 ............................ TATACCATGTGAATTAGTCAGGGTAACTAAGA 29280 28 100.0 32 ............................ ATCAGCATTCGTGAAACTGTGCCACAGCAGTA 29220 28 100.0 32 ............................ TGCCATGTAAAGCACATACTGATTGTAACCAC 29160 28 100.0 32 ............................ CAGGTAAATGACACGCCGCTAGTGTTTGTTGC 29100 28 100.0 32 ............................ TGTACGCGGCCTGACGGCTTACTACGCCGAAA 29040 28 100.0 32 ............................ TTTGACGCGTGCACAGTCATTAGCTGGATGTC 28980 28 100.0 32 ............................ AAATACGTGAAGATATCAAAGATCTGGCAGCC 28920 28 100.0 32 ............................ CATAGTGGCGCCCCTGGCCAGTCCCAGCTTGA 28860 28 100.0 32 ............................ TGTCGGGCGAGATAGAGCAGGCGAAGCAAAAG 28800 28 100.0 32 ............................ GATAGCCGGTACCAGGTGCTGCACCATTGCAT 28740 28 100.0 32 ............................ GTACTCAGGTACAGCAGACGCATAAGCAAGCT 28680 28 100.0 32 ............................ ATCAGCCAAATCACTGATTGTGACCTCACCGA 28620 28 100.0 32 ............................ GTGACGACATTGTAAAGCTGTGCGGTGACCTA 28560 28 100.0 32 ............................ TTACATAGTGCTGTCTGAGTACTCAACGAAAG 28500 28 96.4 32 ............A............... ATCAGGGTATTTTTTAATTACTGGCATAGTGC 28440 28 96.4 32 ............A............... GACAACCTGAGCCGATACTGCAACATATTTGA 28380 28 96.4 32 ............A............... ATTATCAATCATCCGCGAAAAGCAGCTCATTG 28320 28 89.3 32 C..........AA............... ATGAACTGATTAAATAATTTTCGGGTATCGTT 28260 28 89.3 32 C..........AA............... AGCTATAACGGCAATTTGCCGGTAGTGGCTCA 28200 28 89.3 32 C..........AA............... CAGAACACGGACAGGCAATGTTAACGGAAGTA 28140 28 89.3 32 C..........AA............... CAAATAAGTTCTGTATTCACCTTTCCCATATT 28080 28 89.3 32 C..........AA............... TGTTAAGCGCTGACGAAGTGCAAAGCCACCTG 28020 28 89.3 32 C..........AA............... AGTAGTAGGTTGATTTGGTGTCGGGGTACTTA 27960 28 89.3 32 C..........AA............... CGACTGACCCGGACGTTATTCACCAGTTGATA 27900 28 89.3 32 C..........AA............... TGGAAAGGAATTTAGGCGAAGTATTTCTTGCT 27840 28 89.3 32 C..........AA............... GCACCGACATAACCAAAGAGTTAAGCAGAGAA 27780 28 89.3 32 C..........AA............... GTGGCGGCTACGCGGTGCGGGGGTCATACGTG 27720 28 89.3 32 C..........AA............... TGTTTGCGCTGCAACTGGTTGACGGTTATTTA 27660 28 89.3 32 C..........AA............... ATGCAGGGCAGCCGAACTGCGCTAGTCATGGA 27600 28 89.3 32 C..........AA............... GACATTTTCAACTGAGTGTTCATCGGCGTTCC 27540 28 89.3 32 C..........AA............... ATGTCAGCTGTGATGACGCAATCGGTCTCCTC 27480 28 89.3 32 C..........AA............... GTCATAACAACACATCCAAAAATCAAAAATTA 27420 28 85.7 0 C..........AA....T.......... | ========== ====== ====== ====== ============================ ================================ ================== 67 28 97.2 32 GTTCACTGCCGCTCAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTCAGCTTTGTACGTAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGACTCAAAAATCTGGTAAACCGCTAGAGGAATGCTTGGCGGCTTTGCAGCAAAGCAAGCCGACAGCTTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGACAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAATGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCATTTAAAACAAATGGTTGCAACGAGTTGTTTTTAACAAGGTAAAAAGATGATTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TTGACGCATCACCAGCGCTTTTTGCTCCCGCCCGGCATCAGCCGGACATTTCTGTGTGTTTTTTTTGATCTGTTTCTCGTAAGTGCGGGATAGATCGTATAGCCAGTCTGCTTCTAAGCGCACCATCAATCACAGCAAGCCTGACGATTGGAGGCTAACTAGGTAAACAAGTTGCTTACTTGAGTAATCTATTGATTTAGCGCAGCTGCAGATTTAAAGTTGGGCGGTCTTAAAGGGTACGGAAAATGCCAAAGCACTTCGCCGAAGTGGCGAGGTCTAAGAACACTAAAACAGCCGATAAAGCCGGCCAAGGAATGCATAAAATGACGACTATTGCGACTGTAATCATCCCGCTGCAGGAACTGGATGCAATGCGTGACCGTATCATTCAGTTGGAGAAACGTCTGGAAGACGAAGTGTATCAGCCGCTGGAAGTTACTATGGCTAGGGTGAAAGGGGCGGGCTGTCTGGCAGCCTGGATTGCATACAAAAATATAAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //