Array 1 137003-135003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000001.1 Megamonas funiformis strain An949 An949_contig-115_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 137002 30 100.0 36 .............................. GGGCATGAAATCACCTTTGATGAGCTATTTTATAGA 136936 30 100.0 36 .............................. TTTAAAAGCATAGCATTATCTATATTTTCCCTATAA 136870 30 100.0 34 .............................. TTTATTCCAAAAGAGATTATACAGCTATATGAAA 136806 30 100.0 36 .............................. GTTTTGTTTTATATTAATATTTAGTTAAATGTTTTT 136740 30 100.0 34 .............................. CCGATCAATAGCTTTGTTTTGGGTGACAACTTAT 136676 30 100.0 36 .............................. TTGTAAATAAAAGAATTTCTATTAAAGTCCCATGCA 136610 30 100.0 35 .............................. TCATCAAAAGAAATGCTAGATTTAATTCTAGGTTC 136545 30 100.0 36 .............................. TATGAATACCTTCAATCATCTTTTAAATCATCTAAG 136479 30 100.0 37 .............................. GCGTCAATAACATCTGTTATACAAGAAATACTTTTCT 136412 30 100.0 36 .............................. TTTAGACAGATAGCTGTTCTTCGACTATTTTTAGGA 136346 30 100.0 37 .............................. CTTGTTGGGCACCAAATACCAGCATAAATAAAGCATC 136279 30 100.0 37 .............................. TTCCAGAAACATTCAAATCTTCTATTACAATTCTATA 136212 30 100.0 36 .............................. CCTAAACCATCTAAGAAAAGCATATTGTCATTCATG 136146 30 100.0 37 .............................. ATGAAGGCGGTGCAATGTATACCGACTTTATATCTAA 136079 30 100.0 34 .............................. TAGATTGGAATTCAAAAAATGGTGTAGTTATAGA 136015 30 100.0 34 .............................. TTTTTTCTAAAATTAACGCTTCTACCCAGTTTTT 135951 30 100.0 36 .............................. TCGGATTTAGCGAGTCGAAATAATAGAGATGTACAA 135885 30 100.0 37 .............................. GATGAATATTTCGAGGGAAAAGCATTTAAAAAAATAA 135818 30 100.0 36 .............................. TCTGGAAACGATACAAGGGTATTAATCGGATAGATT 135752 30 100.0 36 .............................. AGAGGACAATGTAAATATGCCATTTTCCCAACTTCT 135686 30 100.0 37 .............................. TAAGTGAGTGGAAATCTATCGGCACAATAGACGCACA 135619 30 100.0 35 .............................. AAAATGTATGAAGCTGATATAGTGTACATCACTAA 135554 30 100.0 36 .............................. TTTGTTGATTGATATATCCAAGAATAAAATTTAGTT 135488 30 100.0 36 .............................. GCTAAAAGGATTGATAGGGGTAAAATACAAAAGAAG 135422 30 100.0 36 .............................. TGTTTTATATATATTCTTCCTTCATTATTAAATCCG 135356 30 100.0 36 .............................. TGCAAATATTCTAGCTGGCTGGCACAGTCCGCCAAG 135290 30 100.0 35 .............................. ATGGAAACTCTATTTAAAGCTTCCATTCTCTTTTC 135225 30 100.0 35 .............................. GCCGTAAGCTTTAAAATTTGTTCGTCTTTCATTAA 135160 30 80.0 32 ......................GAA.A.TG ATGATACAACCTGCATTTACATTAAAAGGCAG 135098 30 100.0 36 .............................. AAAAATCTGCTTATTAGTTGCTCAATCCATTCCTAG 135032 30 83.3 0 .......................CGAA..A | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 98.8 36 ATTTAACTTTAACAATCGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGCGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAATGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCCAATGAAGTTCATGTTGCTGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAACGTAAAATAATTCTCTAAAGGCATTTGTGTAAACAAGTGCCTTTTTATTTTACCAGCCATTTTTTAGTTTAAAACCTGAAATCCTTATAAATAAAGGATTTATTAAAAATCAAAAAATCAATCTCAATCGCTGGTAAAAAATCGCCTAAATATTGATATTTCAACCTTTATAAACTATAATAATTTATAAAAGTATTTATTTTACTGGC # Right flank : TAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTTTTATGATATAGAAAAGAAAAAGTTTATTAAAATTGGTACTGCTACTGAACATAATACACCATTAATCACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGAAGCGTTGTATCTTCACTTGTAGCTCCTGCCGCTGCTATCGCTACATATGGATTTAAATATTTTACTAATATTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTTAAAAAGGCTATTGTGCCTATCTGTGCATTTACAAGCGACTCGAGCATTACACCAGATAAACTATACCAACCCATAGATGCACCAATAGATAGACTATAAACTAAATTCATATTAAACAGATAGCCACAAATCATACCGCCAAAAATAGATCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATCATAATTTTTTATCTTCTCAATTATAGATTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAATCGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 66203-65189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000004.1 Megamonas funiformis strain An949 An949_contig-115_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66202 30 100.0 34 .............................. ATTTCAGTTTTTTCAAGAACGGGGCGAAATCCCC 66138 30 100.0 37 .............................. CTTTAATGCCATATCGATTTTGGTTATAAGTTTATAA 66071 30 100.0 34 .............................. CTAAATGGACAGGTAAAACCACACAGCAAATCTA 66007 30 100.0 36 .............................. TTTTCACTAAACGCAATTATATAAATAATCTTACCT 65941 30 100.0 37 .............................. ATTGTGGAATATAACGCCTTGCATTTGGTGTTCTAAA 65874 30 100.0 36 .............................. AACGACCAAATAAAGTGGCTTTTAGATTAAAAGTAT 65808 30 100.0 36 .............................. CTTAAAAAATAAGGTAGTAAAAACAGATAAAGAAAC 65742 30 100.0 37 .............................. GTAAAATGCGAATGATGGATTTTTATCTTCTACCAAG 65675 30 100.0 34 .............................. GTCCTGATTGCTAGCTTATTTTTTACAAGATTGC 65611 30 100.0 34 .............................. TAGATATGAACTGTTTTTTCTTGCCCAATGCGGT 65547 30 100.0 36 .............................. AAATAACATGCCTCTACACAATAAATATAATCATAA 65481 30 96.7 35 ...............T.............. GCAGTTACATATTCAACTTTATTTATTTCAGAACC 65416 30 96.7 35 ...............T.............. TTATAAGTTAGAGATAGAAATAAATCCCCATCACC 65351 30 96.7 36 ...............T.............. TTTCTCCTTTTAGTTCTTAAAAATGGGTATAAAAAT 65285 30 96.7 37 ...............T.............. TTTTTCGTTGTTCGTGGTTTTACACTTTTTAAGAAAT 65218 30 86.7 0 .................G.....TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.3 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAACTCTGCCATATCCTCATCAATAGTTCTGATGGTCAATGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATAATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACTTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATTCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTTATAAACCTTAATCTTTAAGGG # Right flank : AGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGAGTATTTACTCCTATTGATGTATACTGGGAAAATTCTGCCAACATTAAGATTATTTTATTTGCTATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAATGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATGCAATTTTTCATCAATGGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCGATTGACAAATCATTTTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACATGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : GATAAATATCAACAGTTACTGTACGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1221-860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000046.1 Megamonas funiformis strain An949 An949_contig-115_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1220 30 100.0 37 .............................. GATACTATTTTTACCGACATTTGGTCGATAATGATTT 1153 30 100.0 36 .............................. TTACAACGCTCACGATTTCCTAGTATACTTGCTAAT 1087 30 100.0 38 .............................. ATGTTTCGGTTGATTTCACAGCAACAGTTTTGCATATT 1019 30 100.0 36 .............................. GCAACAGGAGATACATCGGGTGATGATGAAAGAAGC 953 30 96.7 34 ..........................A... TTATATAAAATTTCTTTTTCGGTTTTTAAATTAT 889 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : CAAGGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTCGATCAACCAGTCGATAAAGCCAAAGAATTATGTCGTTTATTCATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTTATTTAAAATTTACCAAACAAAATCAATAAAAATCTCGCTAATCCTTGATAAATAAACATTTTCACTAAATCCCTTCAAATCTCATTATCGCTGGTGAAAAATAACTAAAATCCTTGTTTATCAATACTTTTAATAGTATAATAAAAACCATAAGGATTAATTTTTCTAGC # Right flank : GTTGTAAGATTTTCTCTTTCTAAAAATTCTACCCTAATTTAACTTTAACAAGTAACGATGAAAAAGCCTTAGGAACTGACCATTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATATAAAGCTTATTATTCCTATGCAAATTAGAAAAACAGACTTATATCTTTAATTCTTCTATATCAGCTAAAAGCTTATCTAATTTTTCTACTATACGCTTTTGTTCTGCTAATGGTGGTAATGGTATTAATAAATTTTCAATAATATCTTTACTTATTGCTTTAAAAGTTGTTCCTGTGGATTTCTTTTCAAATATTTTTTTACAATAAAATAATAAATAAAAGAAATATCTTTCTTCACTATTTATTATTTTTATTGAAGCTAATCCTCGTCCAATACAAATTTCTCTATTATTTAAATTTACTTCTCCTACAGGTGCTCTTACTGATAAAAGTATTTCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3722-4340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000053.1 Megamonas funiformis strain An949 An949_contig-115_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 3722 26 100.0 41 .......................... TACCCCTATATGCAATGGTTAAAACTTAATTAACTTGAATT 3789 26 100.0 39 .......................... TTTTTAAGGCAAGATCCCGATATGATTTTATATGGAAAC 3854 26 100.0 43 .......................... AGGTCAAAAAATGACAATGACAATCAGTACCGAAAGTTCAAAC 3923 26 100.0 41 .......................... ATAAATTGGAACTTGTCTGTTAGGACATTTTTTATCAAAAC 3990 26 100.0 39 .......................... TTTAATGAAATCGTTTTGTGAATAGTCCTTGTCTTAAAC 4055 26 100.0 40 .......................... TGAAGATAGCTTAGAGGTAAATTTAAAATTTATTCAAAAC 4121 26 100.0 38 .......................... TTGGTTACACTGCATGATTATTTCTCCTTTTCTAGAAC 4185 26 100.0 38 .......................... TTAAGGAAATAGAAAAGCTTCAGCGTATAAATTAGAAC 4249 26 100.0 38 .......................... ACGGTACACCAGTTGCCTATGTTGCCTATTTAAAGAAC 4313 26 84.6 0 ................GTCT...... | C,T [4328,4338] ========== ====== ====== ====== ========================== =========================================== ================== 10 26 98.5 40 GAGACCGTACAATGTTAATGCTTAAC # Left flank : CTTGCCTTTATCATTGTAAACAAGAATTGTAAGTGGTGCATAATCTTGTCCATAAATACTTTCAAAACCTTTTTCTAAAGGCATTTCAACTTTTATAAGATTTAATCCTAATTCTTTTACTTCTATACTATCTATTTTTGCCATATCTTCAGTAGCAGCCATACTAACACCACTTTGTAAACAAATTACAATCGCTAAAACCCAAGCCATCAATAATTTTTTCATAAATATCTTCCTCTCTTTTAAATCATTATCTTATTATATATATCTCCTGTTTTTTCCAAAATTCGGCATGGTTTTTAAAAATTTTTATAAAAAAAAGACATAACTTTAATCTAAGTTATGTCTTTCTTTCATTTTACTGCTAAGCATCACTTGTTAATATTAATCAATAATTCACCATAAATACATTTAGCATCATCCTACAATCTAAATCACATTATACATTGTTAACACTTAACACTAAAAAACTCAAACGGCAACAATTCAACCTTAACAAT # Right flank : ACATCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGACCGTACAATGTTAATGCTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 7759-6678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000008.1 Megamonas funiformis strain An949 An949_contig-115_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7758 30 100.0 34 .............................. TCAAAGGTGATTTCATGCCCATGAAGAATTTTAT 7694 30 100.0 36 .............................. AGAAAGATTTTTACATTATAAAATTCCTTATCTTGG 7628 30 100.0 35 .............................. AAAGCCGAACAACCTACATTACGTTGTAATTGGTC 7563 30 100.0 38 .............................. TCCGTAAAAGTATTATGGTATGTGATGGTAAACCAATA 7495 30 100.0 35 .............................. GTAATAGACTCTGAAAAAGCAAGAAAAGATATAAG 7430 30 100.0 36 .............................. ACATATTGCTAATAGTACATTTACAGGAAGAACAGT 7364 30 100.0 36 .............................. GTAATAGACTCTGAAAAAGCAAGAAAAGATATAAGC 7298 30 100.0 36 .............................. TTATCTCTCTACCACTTGGAAGCCTTACTTTTTTAT 7232 30 100.0 36 .............................. GTTTAGCTCCAAAAGTGGGGTAGTAGACAATTTTGT 7166 30 100.0 37 .............................. CTGGATAAAATCTCCGCTTCTTAATATCGGCATACGT 7099 30 100.0 36 .............................. AACGCAAGCGGGTCTGTAATATTGCCTACTAACGGT 7033 30 100.0 34 .............................. CCGCCTTTATTTTGCGTTATGGCTTGTAATACTA 6969 30 100.0 36 .............................. AATAATAAAGCTTAAAAACTTACTTCACATTTTATA 6903 30 100.0 36 .............................. TGCGTGGAAACAGGGGCTATTACAGTAAATGAAAAC 6837 30 100.0 36 .............................. ATGTAAAACCTCTAGCGGGTTCACAAAAGAGAAATG 6771 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 6706 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.6 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCAATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 5962-4413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000017.1 Megamonas funiformis strain An949 An949_contig-115_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5961 30 100.0 36 .............................. TGCCCAGGATTGATAAAAATTTTTAACATTATGCAT 5895 30 100.0 36 .............................. TTTTGGTAACCCCTTTCTTTTTTATTTACCTTACAT 5829 30 100.0 36 .............................. TTGATTGAGTCTAACGGCTTTTAACGGCTGTTAATC 5763 30 100.0 35 .............................. ATTAGAAAAAATGGAATGTATATGACGGCTTCCGT 5698 30 100.0 35 .............................. TAAAAAAACAAGTATAAAAGAAGCAAATATAAAAA 5633 30 100.0 36 .............................. ACGAAGCCAAAGTGAGTGCATTAATTATATTATGTG 5567 30 100.0 36 .............................. TCAAGTGAAAACGGTCATGGTAATCAATATATTTTT 5501 30 100.0 35 .............................. TTCTTGCGATAAAGAGCTACATTACAAGCTTCAAA 5436 30 100.0 36 .............................. GCTCGATATACAGCATTAGAACTTTTAACGTGGTCT 5370 30 100.0 36 .............................. TTTTGGTAACCCCTTTCTTTTTTATTTACCTTACAT 5304 30 100.0 34 .............................. TCAACTGTTGCTCCTAAGCCAATTAATTTATTAA 5240 30 100.0 37 .............................. TTGAACAGTCAAATAACGAAGCTAAAGACACAGCTGA 5173 30 100.0 35 .............................. TTTAATGATAGCAGCTTTAGAAATAGAGTTGTTAC 5108 30 100.0 36 .............................. TGACCATAGCAATTACCCAATGTTACTTCCAGACAG 5042 30 100.0 35 .............................. TATCATCAACAAAATCTATACACATTTTACCACCT 4977 30 100.0 36 .............................. GAACAAAGTAATAATGTGGCTGTTAAAGAATTATCA 4911 30 100.0 38 .............................. TGAAGCCGACTACAATGGGTGAAAATATTACAAGGTGG 4843 30 100.0 36 .............................. ACACGTAGTGTATAAAAAAAGAGCTTTCGTAGCTCT 4777 30 100.0 36 .............................. GGAAATGAAGCTAGTGAAAGATTGATTGAACATGGA 4711 30 100.0 36 .............................. GATATTGGTGCTACAGTTTTGGGCGGAGTGATACCG 4645 30 100.0 37 .............................. TCTACATCTTTTATAATTTTACCTACACTATATTCAC 4578 30 100.0 37 .............................. GCAATTCCACATAAGGCTTTTAAACCTCTAGACCACA 4511 30 93.3 37 ...............T............G. TATACAAACGTTATGTGGTAATGTAATTTTGCAAAAA 4444 30 80.0 0 ............T....TAC........CA | A,T [4416,4420] ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.9 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGTGGTATTGCAAGTGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTAGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTAATAAATAGCCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTATATAACTAATAAAAATCAAAATCGCCTGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : AGAACAAAGAAGAATTTTATTTTATGGAAAAATTATATTATATTGGGATAAGGAAGGTGAAAAATTGACCAAGAATAAATAAAAGGAGTTTTGTAAATGAAAAAAATTCTTATTATATTTTTTTTATTATTTGTTTTTTGTGTTCCAGTATCGGCTAATACTGTAACTATTTCTGATGATTTATTCAATGCTACACTAAATACATCTAGTCCTATAAAAAGTATATTTCAAAATAGAGCATTTCCGTTATCTATAACAACAGAAGACAATACGATTTATACTTTTAGAGCCAAACCAATTACAGATAAAATATTATCTATACATCATATTCCACTGGATATAAATAATGATAATTTTCTTGATGAATGGAAAAACAATATATTAAATAATATTAATGGTATATACTATATAGAAACTATACCTATAAAAAAGGGAATTATTTACATTACTAGAGATAGTAAAAAATCATATATATATACTATCTATATAAAAAATAATTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 48304-47489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000017.1 Megamonas funiformis strain An949 An949_contig-115_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48303 30 100.0 35 .............................. TGGATAGGAATAGAGCGAAGACCAGCCTTTGTTTT 48238 30 100.0 36 .............................. GCAGGCATATGAAGGCATGGTTGATATGTTATTGGA 48172 30 100.0 36 .............................. TTATAGTATTTATAAGTAAGTTTTTCTTCCTCTTCA 48106 30 100.0 36 .............................. CTTTTGGATACATATACACCTAAACCATTGGAACCA 48040 30 100.0 36 .............................. TGGTGCCACCTCGTCATTATTATTAAAATACCCCCA 47974 30 100.0 36 .............................. GTATCTTTAGCGATTAAATGATGTATAACTACTTTT 47908 30 100.0 35 .............................. CGTTTTATAAGTTCCTTATAATCTAATAAATCTTT 47843 30 100.0 36 .............................. TCAATAAGCTCTAATCCTTTTAATGCTCCTGTAGAA 47777 30 100.0 34 .............................. TTAAAACCAACAAATCAAAAGTTCTTCCAGTGAA 47713 30 100.0 36 .............................. CTTCCTAGATATGGATTTACACAAGCTTTAGAGATA 47647 30 100.0 34 .............................. TGAAGGAAAAGAAGTCTATGTAATGGCTGATGGT 47583 30 100.0 36 .............................. AGCATTGCACCTTCAGGAATAATACTTGTGAAGTAG 47517 29 93.3 0 .........................A-... | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 99.5 36 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : TATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTACGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAGTTAGAGCTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAGAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATGAGTATATGTTTATAAACCCTTATAAATAAAAGAGATATAGTGAATTTCTTGCATTATAAAGATAAATACATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGCTTTTGAACTATATTATAAAATGTAAAGTCTTTAAAAACGAGGG # Right flank : GAACTTAGCAATAGAAATATATAGATATTTTAAAATAAAAAATGATAATAAATTATTATGAATAAATATATAAGCTATTAATAATTTTTATAGACTGAAAGGATTATTTTTGTTATAATATACAAACTATGACTTTGAAGGTATATATTTGACAAAAATAAAAATATTATTGGTTACTATTTGTATTATGGTGATGTCTACTATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAGCGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGTATTAGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACGATAAAGATCTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGCATAAACATAAGGATGTTGTTTTGTATAGAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 90616-90257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000003.1 Megamonas funiformis strain An949 An949_contig-115_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 90615 31 100.0 33 ............................... TTTTCTTCGGCTTCATCTAGCCAATATACAGAA 90551 31 100.0 35 ............................... AAAGATATGCTAAATTGTATTGTTTATATTCTGCC 90485 31 100.0 35 ............................... CTGTTCTTTATATCAGAATCCAAATCTATTTCTTT 90419 31 100.0 35 ............................... TTGTCTTTTAAATACTGTTCTGCTTTTTTATAGGC 90353 31 96.8 35 T.............................. CATTCTGGATTGTTACACTACTAATTTTTACATTC 90287 31 87.1 0 C.......................TT....A | ========== ====== ====== ====== =============================== =================================== ================== 6 31 97.3 35 AGATAAATATCAACAGATGCTGTACGAAAAC # Left flank : ACTTAAATTTTTGCCTGCTTTTACTTCATCAAGAACTTGCTTTGTTTCATTATTAGGATTTAATGTTAAAGCAAAAGGAATGCCATTATTTCTAACAACAGCATTTAAAAACATATTTACAGCTGTAGAAGTATTTAATCCCAATAAAGATAAAATTGCTTCAGATTGTTTTTTTAAATCTTTATTAACTCTTATATTTAACGTTGTAGTTTCAGACATATATATCACACCTCTCAATATTATTATATATAAATTTGACAAAAAAATATATAATAAAGACAAAAATTGACAAAATTCATAGATTTTTCATCATATATTTATAAATATTCTTTAAAATAAAATTTACCAACCTAAAATTTATAAAATCTTCACAAAGCTTAATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTACTGGTAAAAATTATAAAAATCTTGCAATATCAATAGTTTATAATTATAATGTAATTAATAAATCCTAATAACATTAG # Right flank : AAGTCCTCTTTATTAGATAAGAGGACTTTTTTATTCAAATTTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATCATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGCGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCGACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCTAAAAAAGCTGGTGCTGTTTTTGCTTATGGTGCCTTTTTAACAGATTTTCTCCAATTCTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAACAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAAAATCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATAAATATCAACAGATGCTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 49111-49341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000016.1 Megamonas funiformis strain An949 An949_contig-115_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49111 30 100.0 38 .............................. TCGATATCTTTGCGAGCTAATGCTCCTATTTCTTTTAA 49179 30 100.0 38 .............................. AGCCCTCAAGGTAATCTCGCCGCTTATGGTGTTTTAGG 49247 30 100.0 35 .............................. TGTTGTAATCACATGCTAATTCGTTTATGTTGCAA 49312 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GTTAAGCATTAACATTGTACGGTCTCGTAT # Left flank : AACAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGGGAATAGACAAAATATAGAGCTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGGTAAATAACGCTTTACAGAATATTCGAGGAGTGAATTCAGCAAGGGTAAATAGTTATGATGAAGGTACAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGTAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAGTCTATAATATCAAGCATTAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATAAAAGAAAAGAATATTGATTTTACTGC # Right flank : GAATCCTTAGATTTTTCTTATCATATAAGCTATTATAATTAAGTAGTTATACAATGTGATTTAGGTTGTAGGCTTATGTTAAATGAATTTATGATTAATATTAACAAGTGGTGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACTATGCCAGATTTTAGAAAAAGTAGGGGATATATATAGTAAAGATTAGAAAGGGTGATTAAAAAAATGAGTTTTTATCAGCCGAAAAAGTAAAAAATCTATAATATCAAGCATCAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGGAAAAGAATATTGATTTTACTGCGATTAAGCATTAACATTGTACGGTCCCGGTCCCATGTATTGAGCAACATCTGTGTTAAGTATTAATATTGTATAATGTGATTTAGATTGTAGTGTTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 50184-50405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000016.1 Megamonas funiformis strain An949 An949_contig-115_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 50184 26 100.0 40 .......................... CTGTTTGGCTTAACCTCTAACGTTTTGGCTATTTTCCCTA 50250 26 100.0 39 .......................... ACCTTTAATTCTTTTAACATCATTGTTGTTTTCCTCCTG 50315 26 100.0 39 .......................... ATCAACAACTTCAAGTGGTGGATATCAATATATATATAC 50380 26 76.9 0 ..............A....TAA.G.G | ========== ====== ====== ====== ========================== ======================================== ================== 4 26 94.2 40 GTTAAGCATTAACATTGTACGGTCTC # Left flank : AAGATTGAAAAATAAGGATATATAAGATATAATGAAGGAAAAGAATATTGATTTTACTGCGATTAAGCATTAACATTGTACGGTCCCGGTCCCATGTATTGAGCAACATCTGTGTTAAGTATTAATATTGTATAATGTGATTTAGATTGTAGTGTTGTGTTAAATGAATTTATGGTGAATCTTTGATTAATATTAACAAGTGATGCTTGGCAATAAAATGAAAGAAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACTGTGCCAGATTTTAGAAAAAGTAGAAGATATATATAGTAAAGATTAAAAAGGGTGATTAAAAAAATGAGTTTTTATCAATCGAAAAAGTAAAAAGCCTATAAAATCAAGCATTAAGAAGGATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAAGATATATAAGCTATAATGAAGGAAAAGAATATTGATTTTACTGTT # Right flank : GATTTAGATTGTAGAATTATGCTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACTGTGCCGAATTTTTGAAAAAGTAGAGGATATATATAGTAAAGATTAAAGAGGGTGATTAAAAAATAAATGAATATTAAACTTAAAGGTAAACTAAAAATTTTTGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGCAAATGAAATTAAAACAAAAATTTGTATTCCAAAGGGAGCTTTCGGTGGAAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATATTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGTGTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 51725-52274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000016.1 Megamonas funiformis strain An949 An949_contig-115_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 51725 29 100.0 36 ............................. CGGTGAAGATTTAGCTACAACGTCAGATGTTGTAAG 51790 29 100.0 36 ............................. CAAATCACTATGACAATATCGAAAGCCTGCAAGAAA 51855 29 100.0 36 ............................. CTATCTATTATAGACTACAATGAAGGAGCTGTAAGC 51920 29 100.0 34 ............................. CAGATAAAAATGTTTATGAAGAAGGCACTTTAAA 51983 29 100.0 34 ............................. AGAATTTGTTGCTTTTGAAACTTTTGCTTAACAT 52046 29 100.0 37 ............................. TTAATATAGCGCTTCTTATTTTTACGCTCTCTATTAA 52112 29 100.0 35 ............................. TTTAGATATAGAAAAGCAGGATATGGATTTAACGA 52176 29 93.1 41 ..........................G.A TACCCCAGCATCTTTCCAAAATAAGATATCGACGGTTCAAC 52246 29 89.7 0 ..........................GTC | ========== ====== ====== ====== ============================= ========================================= ================== 9 29 98.1 36 GTTAAGCATTAACATTGTACGGTCTCACT # Left flank : GTCTTTTTTTTATAAAAATTTTTAAAAGCTATGCCGAATTTTGGAAAAATCAGGGGATATATATAGTAAAGATTAAAGAGGGTGATGAAAAAAAAATAAATATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACAAAAATTTGTATTCCAAAAGGAACTTTAGGTGGAAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGCGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATAAAAGAAAAGAATATTGATTTTACTGCG # Right flank : CGCTGTATCCGTGTGTCCAGTCATTATGTTTAAAGAATGGTTAAGCATTAACAATGTGTAATGTGATTTAGATTGTAGAATTATGCTAAATGTATTTATGGTGAATTATTGATTAATATTAACAAGTGATGTTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAAGAATGCCAGATTTTAGAAAAAGTAGAGGATATATATAATAGAAAGCAATAAAAATGTAAATAAGAACACTCCTTTTGATTTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAATAATGCCGAATTTTAAATTTGCTAGGTAATATATATAGTAGAGATTAAAGATGATATTGAAAAAATAAATATAAAAATAAAATAAAGTTTTATAGATAAGATGGGAGATTTTATGATGAAAATAAAAACAAGTATCTTTAAAGAAATTATAGAAAGTCCTGCACCGCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 53292-53907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000016.1 Megamonas funiformis strain An949 An949_contig-115_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 53292 30 100.0 36 .............................. ACCTATTGCACGTGTTAACTATGGATTTGCTGGAAA 53358 30 100.0 35 .............................. TTTTTTATCTCCTTTACTTTTCCCGCAAGCAAAGG 53423 30 100.0 35 .............................. GCTCGATTATGAAAAAGTTGAGCCACTTTATGAAG 53488 30 100.0 35 .............................. CAACTGTTTATCGAAGCTGGTTGAGAAAAAATTAA 53553 30 100.0 35 .............................. GTTTTAATAATTCTCTAGCATCGTCCAAATCACTC 53618 30 100.0 36 .............................. AGAAATTGGGGAAGATGTATCCAATCAAATTAATAC 53684 30 100.0 35 .............................. CTATCTTTAGAATAGCGGAGAGGATATTTTACTCC 53749 30 96.7 34 ............................T. GTTGCTTCTGCTCGGCAACCTATATTTGGTGATT 53813 30 90.0 35 ..........................CAT. AATACAGAGTAATTATTACTAGTATGAATGCAGAA 53878 30 86.7 0 ....G.....................CAG. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.3 35 GTTAAGCATTAACATTGTACGGTCTCTCCT # Left flank : AATCGGTGGCAAAGAAGATATTATTACCTGTTACTTTGCAGATAAAGGTAGTAAGGAAAATTGCTATGATTCATATTATCCAAGTACAGATTTATTAAATAAACAGATAGATAAATGGCAAGATGATGGAATAGATTTTTATGGAATTTATCATACACATTTTGCTGGTGATGATGGTTTATCTAGCAGTGACCGTAGATATATTGTCAATATAATGCAAGCAATGCCATCACAAATACAGTATTTATATTTTCCTATAGTATTTAAAAATAATATGCTTATATATAAAGCTATACGTGAAAATAATATAGTGAAGATAGTTCAAGAAGATATTGAAATAATTTAAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAAAAGAATAGGCATAAAACTGAAATCGGCTGGTAAAATTTCTATTAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TGACCATATAAATACTCAAGTTGATGATACTGATGTGTTAAGTATTAACATTGTACAATGTGATTTAGATTGTAGAATAATGTTAAATGTATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAAATTAAAGTTATGTCTTTTTTTTATAAAAATTTTAAAAAACTATGCCAGATTTTAGAAAAAATGAAAGATATATATATTAGAGAATTGATGAGGTGGTAATCATGAAAACTTGGATGAAAAATTTAATTTTATCAATATTGGCTATAATAGCAGTAATTATTTTTCATGAACAAATATGGCAGGGTATATTATATGTTTTAAGTTTTTTTCTAGGTTTAATAATAGATTTTGTCAGTCTTTTAGTCGTAATTGGTGTCGGTATGTATATTATCTTAGATTTACTTAGTTAGATAAAATTAAAAATTTTTATAAAAATTTTAGAAACTTAATGCCGAATTT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 57876-58364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJIV010000016.1 Megamonas funiformis strain An949 An949_contig-115_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 57876 30 100.0 35 .............................. TCGATATATCCAGGATAACTACCCGCATTACTATA 57941 30 100.0 37 .............................. TAATGCCTTCTATGTCAAATTTCGGATTTTCCATTGT 58008 30 100.0 35 .............................. CCGAAGAAGATGCTCGTGCTGCTGGATATAGACCA 58073 30 100.0 35 .............................. TACGCTTGAGCAGGAAAAAAACTAGAAAATTTTAT 58138 30 100.0 37 .............................. ATGTTTCAGATAAAGGAACAGCAACAGCTGCACCAGC 58205 30 100.0 34 .............................. GTTAATTTTATAATTAATTTTTCCATAGCTATAA 58269 30 100.0 36 .............................. TTAAAATTGTATTGATATTCTATAAACGACTTTGGC 58335 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTAAGCATTAACATTGTACGGTCTCGTTC # Left flank : AGCAGAAAATAGATATAGTCATTTTCTTGACAATTATGCTGTAATGTTCGAGATTTAAAAGATATTAAAATAAAAGTATAGCCTGATGAAATTTTCATTGGGCTATTCTTTTATCAAAAATAATATTTAATTTTTTATAAACTTAAAAAAATCATGCTGAATTTTAGAAGAAGGAGGAGATATATATAGTAGAAAGAGATAAAGAAATATAAATTAAATTAAAAATAAGAAGGGAGAAATTATTATGGATAAGAGATTTAAGCGGTAGAGTATATTGCAGATATTATGATGATTAGTATTATTCATAAAAAAGATGAGTTTTGCTCGAAAAGATTGAAACAAAATAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAAAAGGATAAGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGCTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TTTAAATAGGCAACATAGGCAACTGGTGTACCGTGTTAAGCCTGTCTCTTATACACATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //