Array 1 460857-462409 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYL01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-2589 NODE_3_length_725872_cov_96.017267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460857 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 460918 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 460979 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461040 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461101 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461162 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461223 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461284 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461345 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461406 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461467 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461528 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461589 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461650 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461711 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 461772 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 461833 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461894 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 461955 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462016 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462077 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462138 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462199 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462260 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462321 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462382 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478724-479241 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYL01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain M-2589 NODE_3_length_725872_cov_96.017267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478724 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 478785 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 478846 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 478907 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 478968 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479029 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479090 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479151 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479212 29 93.1 0 ............TC............... | A [479239] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //