Array 1 38471-33397 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYG01000044.1 Bifidobacterium longum subsp. infantis strain IN-F29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 38470 33 100.0 33 ................................. TCGGTGCCACTGGACTGGATGCCCAGATATCCC 38404 33 100.0 34 ................................. AAGGACATTCTGTGGCAGTATGCGAGACGGCTGG 38337 33 100.0 33 ................................. TCTGCTGCACGAACTTGTCCAGCAGATATGGGG 38271 33 100.0 34 ................................. TCTAATGTGGCTTTGTTTCATGTGTCAGTTTCTT 38204 33 100.0 33 ................................. CGCGTACCTTGGCCCAACGGTCAAGGCTTGCCA 38138 33 100.0 35 ................................. CATGCGCCGCCAATCCAGTCGAACACGCCACGTAC 38070 33 100.0 34 ................................. GCCAAGAGTGGCCTTGGTGTCCTCGAAGGCGGCG 38003 33 100.0 36 ................................. AATCAGGCAATGCGCCTGATCGACCAGGCTCTAACG 37934 33 100.0 35 ................................. ACGTGAAACATTCGGCGGCATGGATGACTTGGAAA 37866 33 100.0 34 ................................. ACCTCCGAAGGCGGTTTGGCGTCCCTCACCTCGC 37799 33 100.0 34 ................................. AGCCTGTTCCACGACGACTGCGACTGCCAGATCG 37732 33 100.0 33 ................................. AGTGGAAGCTACAACGACCTGTCGAACAAGCCG 37666 33 100.0 33 ................................. CAGATCGCCAACCCCATCAACGACGTGCAGCCG 37600 33 100.0 34 ................................. ACGCAAATGCAGGTTACGTCGACGGCCCCGAATG 37533 33 100.0 33 ................................. AGTCTGGTGCCAGGCGTCATTTGGGTTGGTCGA 37467 33 100.0 35 ................................. AAGTCCTTGGCCATGTGGACACGCCAGTATCCGCC 37399 33 100.0 34 ................................. CGTAAGTGGAAGATTGACGTGGATTCGCTGTATC 37332 33 100.0 34 ................................. GCGTACTCGACGAACTGGTGGCACATAGCCTCGA 37265 33 100.0 35 ................................. GCGTACTCGACGAACTGGTGGCACATAGCCTCGAA 37197 33 100.0 34 ................................. TGATTCGCCGTGCTCGCCGCGGCGGTGGAGTTTG 37130 33 100.0 34 ................................. GCACAGGCACATCTCCAGCCATCGTTCGTCCACG 37063 33 100.0 33 ................................. CGGAAATTGGACACCGTCATAATGTCCTCATAG 36997 33 100.0 34 ................................. ACCAGAGCTGCGTAAAACTCGTTTTTCAACTGAG 36930 33 100.0 35 ................................. CACAACGCAATAGGGGTAGCAGTAGAGTTTGCGGA 36862 33 100.0 34 ................................. ATCCACGAGGTACATGCCACGAACCATTTCGAAC 36795 33 100.0 35 ................................. TGATTCCTCGTCTTTCTGGTCTTCGGACGAGTCGA 36727 33 100.0 35 ................................. GACTGCCGGCTTGAGGAATTCAACGGAGAAACCGA 36659 33 100.0 34 ................................. TTCCAGTCGGTGAGCATCCGGCTCGTATCCTCGT 36592 33 100.0 35 ................................. TCTCTAGTTTGTTCGCGGATGGTTCCTTAAGCACG 36524 33 100.0 33 ................................. CAACTGCAGAATCGAGGACAATATGACCGACGA 36458 33 100.0 36 ................................. GACAACGGCGACGACATCCTCGACTACGTGGACATG 36389 33 100.0 35 ................................. TTATTCGCGTATTCCACGACCGCCGAGACCCTGCG 36321 33 100.0 34 ................................. TTGTCCTTGCCTTTGGTCTCGGGGGTGACGGTGA 36254 33 100.0 35 ................................. CGTTCCGGCGGATGTATTCCCTCATCCACTCGAAG 36186 33 100.0 34 ................................. TCCAAGGACGAGAAAACCGACCCGTATGCGGTGG 36119 33 100.0 35 ................................. TGCGCCTGCGTCAGCTTCGCAGCATTATCCCGCAA 36051 33 100.0 35 ................................. TTGCCGCCTGCGCCCAGGCTGCCGTAATCCCATCC 35983 33 100.0 33 ................................. AACGAGACCGGCGGAGACTCCGCACAGGCCATC 35917 33 100.0 34 ................................. AGAGGCGACGCAAGCCAGTGGCAGGCCTACGCCA 35850 33 100.0 33 ................................. GAGAACGAGGGGCGGGATGAGAACGACCCCGAA 35784 33 100.0 35 ................................. CTGCCCTGGGAAGGGTACCACCTCGGCTTTGGTCC 35716 33 100.0 33 ................................. AGGTCGGTGGTGGTTGTGGTCGTTTCGGTGTGG 35650 33 100.0 36 ................................. TTGGAACCATAGGTCTTGCCTAATCCGCGCGCGCCG 35581 33 100.0 32 ................................. AACATCCGTGGTCATTTCTACAGTTTTCGCGT 35516 33 100.0 35 ................................. AGGAAACCACCCATAAAACAGTAAGGCAAGGTGTT 35448 33 100.0 34 ................................. GTGTCTGGGTCGCTGGATTGTCCGAAGTCGGGTG 35381 33 100.0 38 ................................. CAGTTGATTGATTTTTTTTTGTCCAGCGCCCTCATGGC 35310 33 100.0 34 ................................. AGTGTTACCGCCGCCATTGTGGCACACCTTATCA 35243 33 100.0 35 ................................. AGCACCTGTAGGCGGCGGCCGAAACTCCATTGGGC 35175 33 100.0 32 ................................. ATTGACACCAGTACGTTCGAGGGCAAGGTCAA C [35169] 35109 33 100.0 33 ................................. TACAGCATCGAACCGGCAACCGAAGCTGATAGC 35043 33 100.0 36 ................................. CCGATGATCATCGTTTCGAATCGCGAGCCGGACGAT 34974 33 100.0 34 ................................. TCCGGCATTCCAGAAACCTTGCATTCGATCCCTT 34907 33 97.0 34 ..T.............................. CTGATTACCTGCATACTATCCGACAAACCTTGAG 34840 33 100.0 33 ................................. GTTAAAATAGGGCATGATTTCCGCCATCGTCAT 34774 33 100.0 34 ................................. ACGTTCGAAAGCGTGGATAGCCGCCAGGCGAACC 34707 33 100.0 35 ................................. CCGCATATACACCGCCGCCGCTCTCGTCTGCTTGG 34639 33 100.0 35 ................................. CTGACCGTAGCGATTGATGTAATCCTGTGGAATTT 34571 33 100.0 36 ................................. CGGTTGGGCGCGTGCTGCGGTCGTTTCCACGATCAA 34502 33 100.0 34 ................................. ATGTCCGCGTACTGCGCCTTCCACAGCATGCAAC 34435 33 100.0 34 ................................. ATGTCGGTCAACAACGGCAGTGCGTTGGCGTTGG 34368 33 100.0 33 ................................. CAGCGAATCAGGGGAAGATCATATCATGGCTTG 34302 33 100.0 34 ................................. GTGAACTGGATGGCGTCGGATTGCACGCCGTCGC 34235 33 100.0 34 ................................. TGCCGAACGCCCATGCGGGAATCGTCTTGTTCGC 34168 33 100.0 35 ................................. ACACGACGCAAATCAAGATTTACCTCGCGCTTTGT 34100 33 97.0 33 ..............A.................. GTGTCTCCTACTACGGACGCGTAGCGGCAGGAA 34034 33 100.0 34 ................................. AACGCGCCCGAGCCGAGCGTGTTGATCTGATTCA 33967 33 100.0 34 ................................. ATGCTGGTCACGATCCTGCCGTTCGCGTCCACCA 33900 33 97.0 33 ............G.................... AGGACAGGCCAGCCACCCTCACGCCCGCCATTC 33834 33 100.0 35 ................................. ATGTACGAAAAGTTAATGGGCAGGTCGTTGGCCGT 33766 33 97.0 34 ..........................G...... TGCTGGGACGAGATGTTGGAAACGACGAACTCGC 33699 33 100.0 35 ................................. GTCGGATGGTGGTGGTCGGCGGAAGCCTAAGCCAC 33631 33 100.0 35 ................................. AAAACAGCATTCGAAACCAACCCCGACGAGGTAAG 33563 33 97.0 35 .............G................... TGCAAATGGAAAACGTGCTGTCTGATGAAGCGTTC 33495 33 93.9 34 ....T...T........................ ATTGACATGTAACACACATTCATCTGCACGGTAT 33428 32 90.9 0 ..........A.T-................... | ========== ====== ====== ====== ================================= ====================================== ================== 76 33 99.6 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : TGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAGGATCGAATATCGAGGAAGGCAGCGACATATACCTGTTGATGACGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATATTGGTCGGTGCGAGCCCCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCTCGCG # Right flank : ACAGGATTAGCCGGTGTCCCAAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCATACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCTGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTGATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGGACATGGACCCTGACTTGTTCTTCCCCGCCACGCGGCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCTCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGGCAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //