Array 1 194641-191493 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSMN01000002.1 Acinetobacter baumannii strain CFSAN059618 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 194640 28 100.0 32 ............................ TTGTGAGTGAAAGCCTACCGGCTCCTCGCCCT 194580 28 100.0 32 ............................ TTTCTTGGGTTGTTCTTAAGTTTGCAGGCAAA 194520 28 100.0 32 ............................ TTTCTGAATGTTTCAAAAGGTAAACAAAAATG 194460 28 100.0 32 ............................ TTGATTTTTTCCAGTTCTAAACGAGCTTTATA 194400 28 100.0 32 ............................ GATTACCGTTGCAAGGTTCAAGCGAAGCCGAC 194340 28 100.0 32 ............................ ATTTAGTGATGTGGTGAAAAACTGGTTCGGGA 194280 28 100.0 32 ............................ TGAAATGATTCTTTGCTCTTTAAACCATTACG 194220 28 100.0 32 ............................ ACGCCCTACCAACCTTAAATGTAATGCTCCGT 194160 28 100.0 32 ............................ TTCAATGCTGTCAACCTTCTGCTCTAGCAGGT 194100 28 100.0 32 ............................ TTTCAGATGATGTACAGAAGCATGATGAGTAT 194040 28 100.0 32 ............................ TAATCGAACCGGTGTTCACACGCTGGCTTGAA 193980 28 100.0 32 ............................ TAGCGGCTCCCATGCAACGCTTGCGGCTTCAA 193920 28 100.0 32 ............................ AAAACACATGCAGATCTGTCTCAGGATTATCA 193860 28 100.0 32 ............................ TTTCCCGCATAGCCAGACATTAGAGTCGCCAT 193800 28 100.0 32 ............................ AGAACGCCGCGTCGTGCTTCATCAAGCTTAGT 193740 28 100.0 32 ............................ AGACAATGATAGACGGCTTTTTGCCTTGTTCG 193680 28 100.0 32 ............................ TGTAAGCGTTTGTTTGCGCTTAACAGAAGGGT 193620 28 100.0 32 ............................ TCATTAACCTCCCAAGTCATTTGAAACTTGTG 193560 28 100.0 32 ............................ TGAAATACCATTAATAAACAAACAACAATCTA 193500 28 100.0 32 ............................ TTCATGATGCGTTGAGCCAATTCCTCGCTTGT 193440 28 100.0 32 ............................ TGAAGTTAGCATCACAGGAAAATTAACAGTAT 193380 28 100.0 32 ............................ GTTCTGTGCTCACTCAAATCATATTCGCATTT 193320 28 100.0 32 ............................ CTGTTGTGTTTGAGGGTTTGTCTGGTGCGCCT 193260 28 100.0 32 ............................ GTAAGGATGTTGCAACCACTCCGATTGTCGTC 193200 28 100.0 32 ............................ AACACGAGTTTGAGCTAACGTAACATCAGAAA 193140 28 100.0 32 ............................ AGTTGCAGGAGGTGTACTCGGATTTACAAGAT 193080 28 100.0 32 ............................ ACGTTCAACGATAGCAACGTGATTACCATGAA 193020 28 100.0 32 ............................ TGAAAAGCACCGCCTCACAAGCGGAACGCTGC 192960 28 100.0 32 ............................ ACGCTATGCCAATAAGTTTATCGTGAGGTATA 192900 28 100.0 32 ............................ TTACTCACCAACTCTTGCGCTACTTGGGTAGA 192840 28 100.0 32 ............................ ATCAAGCTTGAACTTGAGCTGCCGAAGCCTTT 192780 28 100.0 32 ............................ AAATCAACACTCCTTTGACTGGCCTTGATACG 192720 28 100.0 32 ............................ TTTAGCACAAGTCCCGAACCAATTTTTCACCA 192660 28 100.0 32 ............................ ATATTGAGCAGTTCTGATTTGACCAGCTCCAA 192600 28 100.0 32 ............................ ATCCATCCATGTTAATTCATCATTTCCATAAA 192540 28 100.0 32 ............................ TTCAGCATAACCCTAGACATTCCAAACTTCTC 192480 28 100.0 32 ............................ ACTCCAAGAGTTATCAACACAGATTTTCAAAA 192420 28 100.0 32 ............................ ATCCATATTGATTGTCGCAAAAGTGATATTTC 192360 28 100.0 32 ............................ ATTAGGTAGTACAATTTCTTCACGTACAGTTG 192300 28 100.0 32 ............................ TTGTGGAATATTTGCCTCAAGTGTAGCAACAA 192240 28 100.0 32 ............................ AATCAAAATCATTAGCTTGCTGTTTAACTTCT 192180 28 100.0 32 ............................ ATAAATATGACGCCTACATGAGTTTTTAGCCA 192120 28 100.0 32 ............................ ATTCATGCAAGGTGTTAATGCTGCAACACGAG 192060 28 100.0 32 ............................ TAAAGCTTTTGAATGTTGAAAAACATGTTAAG 192000 28 100.0 32 ............................ CTATTTATGATGGCGAGGATAAAGCGGTTATT 191940 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 191880 28 100.0 32 ............................ AAGATTATTGATGTTAAAGCAACTAGCGTTGG 191820 28 100.0 32 ............................ CAAATTGAAGCGATTACAGATAGAGATAATTT 191760 28 100.0 32 ............................ CCTAAACATTCCTTGTATGTTGTGCACAATGA 191700 28 100.0 32 ............................ ATAGCAATTTCAGACCGCATAGGCTTAACTAC 191640 28 100.0 32 ............................ ATTGTAAGGTCGATAGGAATGTCCATTCCACC 191580 28 100.0 32 ............................ ATCCCAGCATCACCATGCTTGGCATAAGTTGG 191520 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 53 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ACTTTAAAAATAGAAGCCGTTTTACGTACATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTTCCCGTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCACACGATGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 199730-203538 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSMN01000002.1 Acinetobacter baumannii strain CFSAN059618 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 199730 29 100.0 31 ............................. TGTCTCTCTAATAGCTCTTGAAAGGAGAGCT 199790 29 100.0 31 ............................. TACGTATCAAGTCTCACCCACTGCTTAGTGA 199850 29 96.6 31 ............................G CGGGTCAATGGTCGGGAGTATCGGCATAAAA 199910 29 96.6 31 ............................T ATCGTTTTAGTTGTGCTTGCGGTACTCGCAC 199970 29 96.6 31 ............................T TGCGAGTCAAGCCGACAAAGTAATCGCTATG 200030 29 96.6 31 ............................C ACGTAAAAACGTTACCCCTCATGTATGTATC 200090 29 96.6 31 ............................T CGGAGATGATCCAGTCTGTCCCCAAATTATC 200150 29 96.6 31 ............................G AACGTTTACGTAAGGTCCAGTAATCCAGACT 200210 29 96.6 31 ............................G TCATCAGTTAGTGGATGGAAAGCTATCCCCC 200270 29 100.0 31 ............................. TGATGATTTTGGCATCCAAGATGACTTTAAT 200330 29 100.0 31 ............................. AAAAGACCAAACAATATTCTTGTTCTTTCTA 200390 29 100.0 31 ............................. ACCAATTGTGTCACCTGAAGCGACTGTTTGA 200450 29 96.6 31 ............................T TTTCGCCAATCGTGTAATACGCATAGAATCT 200510 29 100.0 31 ............................. ACGACTGAAGCTGCTGTACCAACTGCTAAAA 200570 29 100.0 31 ............................. GGATATGAAATACCTGGTCTAACTGAGCTGT 200630 29 100.0 31 ............................. CTATTAGTCCATGCAGAAACAGTAGCTCTAC 200690 29 96.6 31 ............................T TCAAAGTACACAGCGTAAATTTCACCATCAA 200750 29 96.6 31 ............................T TACGGGTTAAATCGGTGTAGATGTAATTACC 200810 29 96.6 31 ............................T CAATGCGCTTCATCACCGATGGATTGCTAAG 200870 29 100.0 31 ............................. ACACCACGATCTGAGCTTGACAATTCATCAA 200930 29 100.0 31 ............................. ACACGGGCACAGAATGTATCTGTGTAGATGC 200990 29 100.0 31 ............................. TTTGGTCAGGGATGCATTAGGCGCTATTGAC 201050 29 96.6 31 ............................T TCATCACCTTGCAAGATTGCAGACATATCAG 201110 29 96.6 31 ............................T TGGGGTGAGAATGTCATTCAGCTTAAAACGA 201170 29 100.0 31 ............................. ACACTGGTATAAGGATGGGGGGCGCTTAATA 201230 29 96.6 31 ............................T TGAGCTGCTAACACTTTGGATACCGCATTTT 201290 29 100.0 31 ............................. AGACCAGTTTTGAAGGATATTAACTTTTTAT 201350 29 100.0 31 ............................. TCAGGCTTTTTTATTTCCGATTGCTGTGAAA 201410 29 96.6 31 ............................T AAGTCTGGCCATACATACGACCTTTTAACAG 201470 29 96.6 31 ............................C AACTGAAAAACATCCAAAATATTCAGCATTA 201530 29 100.0 31 ............................. TATTCTGATGAGGCAATCTAAATATATAAGT 201590 29 96.6 31 ............................G TTCTGAGAAAGACGGTAAAGAACGCGCATTT 201650 29 96.6 31 ............................T AAAACCCTACCAAGTACTTACGGTGTCTTAA 201710 29 100.0 31 ............................. CCATCACGTTGTAGGTTCCGAAGAAATTATC 201770 29 100.0 31 ............................. AAACTATCGCGAATTAACGCTTGAACAGTTC 201830 29 100.0 31 ............................. TAAACCAGATCATCACGCGCCTTTTCACGCT 201890 29 100.0 31 ............................. CTAAATACAGGCTTTGACGTAATCTCATAAC 201950 29 96.6 31 ............................T GAACATAGTTATTAGCCTGATAGGACTGATT 202010 29 96.6 31 ............................C TGAAGACACTTTTCTATACCGCTACGTTACA 202070 29 96.6 31 ............................T TGCAATAACTTTGCAGGCGAAGCCTTAATCT 202130 29 100.0 31 ............................. TTCTGTGGAAGGAATGGCGGTAGGTTTGCAA 202190 29 100.0 31 ............................. CCAGAGATTGCAAGAGCAGCCATGCTGACAA 202250 29 86.2 31 ....G.......CC..............G CTACCAGTCTTTGCACCAAGATAATTTTTAA 202310 29 93.1 31 ....G........C............... AGCGGTCTTGATAGTTCAATGGTTTCTCTCC 202370 29 89.7 31 ....G.......CC............... CAGTACCGTTCTAACTCGTCAGTGCTTGTTG 202430 29 82.8 31 ...AC.......CC..............G GAGTAGTCCAGTTTTCTTTCTGAGCTCTACG 202490 29 93.1 31 ...GC........................ CAACTTTTTAAATTTGAATTTATTTTAGCTC 202550 29 93.1 31 ....G...............C........ TTTGTTGCACAGTAATGGTGTACTACGGGAT 202610 29 82.8 31 ...T..A...T.TC............... ATGTGCTTTACGGGGATGAGGTATTCTTCCA 202670 29 86.2 31 ...GC.......G...............T CACTCGTTGAGCCATAACGCCCCGACTCAAT 202730 29 86.2 31 ...GC.......G...............C GTCAGATTCCAGTAGGTCTAAAGACAGATTC 202790 29 89.7 31 ...GC.......................G CACATAAGGATCAAATTTATCACTTCCTTGT 202850 29 89.7 31 ...GC.......................T TATGTGGGGTTTGGGGCGAAGCTCCATATCT 202910 29 79.3 31 ...GC......TG...........A...T CAAGTTTTTTGATACTTGGGAAATGTGTTTC 202970 29 93.1 31 ...GC........................ GCTATCCAAAGCGTTCAATGATCATCTTCGG 203030 29 86.2 31 ...GC.......G...............T ACAGATGCAGACCGACTAGGGTTCAGGAAGG 203090 29 82.8 31 ...GC.......CC........C...... TATCGAGAGCTTTGTCGATGTAGACCTGCAC 203150 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 203210 29 93.1 31 ...GC........................ CCATTGGACTTGATCCGCTCCTGTGCCGAAT 203270 29 86.2 31 ...GC.......G...............T TGCATGTGCAACGGCGCGTACGCTGCTAAAA 203330 29 86.2 31 ...GC.......CC............... CATGGGAGCTTCCATTTAGATGCGTTATCAA 203390 29 82.8 31 T..A........TC..............T GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 203450 29 86.2 31 ...GC........C..............T CGCCCCATTCCATCCAAACGCGATTTAAGTA 203510 29 86.2 0 ....G...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 64 29 94.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTAATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAGAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATTTTAAAAAGAAAAAACCCCAAAACTTACGTTTCAGGGCTTTTCACGAATTGATGGCGACAATTGAACAAGATATATAAGTTATTGTTTTAATGTATCTTTTATAAAAATTAAATTAAAGGGATACACAAGGGGATACAAAACAATTGCTACTAGATAAATTTAAATACAAGTTCGATAAGCACAAAACTTATTTTTAATACTTCAAAATCCCTTTTATGGACTCAAAAAATGTTAGGTTTTGACAGGTTCTTTAGGGCATTCGGAAATTCAAAAATAATTGAAAAGTATTGTATAAATTATGCTGATTACGTAACGCTCCGAAAACTTCCTTTTTATGGACTCCGATAATTATTAAACAGTAAGATTTTATTGATATTCAACGAGTGTAAAAATTCTTTTTAAGGACTCTAAAAATTACTAAACGGTAATATTACGGTAAGGTTTTATTGGTATCTAGAGATAGCCGAATACTCCCGATACGGCAAGATATTA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //