Array 1 1574-2151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSH01000016.1 Escherichia coli strain MOD1-EC5106 MOD1-EC5106_16_length_88772_cov_83.9602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1574 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 1635 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 1696 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 1757 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 1818 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 1879 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1940 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2001 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2062 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2123 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27700-29436 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSH01000016.1 Escherichia coli strain MOD1-EC5106 MOD1-EC5106_16_length_88772_cov_83.9602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27700 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 27761 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 27822 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 27883 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 27944 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 28005 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 28066 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 28127 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 28188 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 28249 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 28310 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 28371 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 28432 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 28493 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 28554 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 28615 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 28676 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 28737 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 28798 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 28859 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 28920 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 28981 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 29042 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 29103 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 29164 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 29225 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 29286 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 29347 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 29408 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATATAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //