Array 1 548-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJS01000013.1 Erwinia amylovora strain UT5P4 NODE_47_length_579_cov_0.690265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 547 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 486 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 425 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 364 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 303 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 242 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 181 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 120 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CAACCAGTTTCGTTAGTTGTTTCTGGGATTA # Right flank : GTCGCGGCAAAGCGCCTTTTGCCGCTGTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJS01000021.1 Erwinia amylovora strain UT5P4 NODE_52_length_522_cov_0.921519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 87 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 148 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 209 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 270 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 331 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 392 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 453 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGCATACATGGACGGAATTTAACGAG # Right flank : TGTCTCCAAGTTAGCAATTTAGTCTCTAAACCGTGTTCCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 369722-370481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJS01000058.1 Erwinia amylovora strain UT5P4 NODE_3_length_415838_cov_50.0095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 369722 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 369783 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 369844 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 369905 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 369966 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 370027 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 370088 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 370149 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 370210 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 370271 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 370332 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 370393 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 370454 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 381389-383555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJS01000058.1 Erwinia amylovora strain UT5P4 NODE_3_length_415838_cov_50.0095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 381389 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 381450 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 381511 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 381572 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 381633 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 381694 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 381755 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 381817 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 381878 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 381939 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 382000 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 382061 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 382122 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 382183 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 382244 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 382305 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 382366 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 382427 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 382488 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 382550 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 382611 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 382672 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 382733 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 382794 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 382855 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 382916 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 382978 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 383039 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 383100 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 383161 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 383222 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 383283 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 383344 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 383405 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 383466 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 383527 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 393019-393347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJS01000058.1 Erwinia amylovora strain UT5P4 NODE_3_length_415838_cov_50.0095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393019 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 393079 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 393139 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 393199 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 393259 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 393320 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //