Array 1 1055-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJW01000013.1 Escherichia coli strain HH-NP010 sequence013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1054 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 993 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 932 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 871 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 810 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 749 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 688 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 627 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 566 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 505 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 444 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 383 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 322 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 261 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 200 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28503-27496 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJW01000084.1 Escherichia coli strain HH-NP010 sequence084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 28502 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 28441 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 28380 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 28319 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 28258 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 28197 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 28136 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 28075 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 28014 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 27953 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 27892 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 27831 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 27770 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 27707 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27646 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 27585 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 27524 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //