Array 1 1370671-1371238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1370671 28 100.0 32 ............................ ATATGCGCATCCCAAGCTTCTGGGGGGCATGT 1370731 28 100.0 32 ............................ GCGTTTAGGCAGCATCATTTTGCCGTCAGCAT 1370791 28 100.0 32 ............................ CATCGATTTAAGATATCGCTGAACTGCACATT 1370851 28 100.0 32 ............................ TGATGATAACGGGCGCGATAAGCTAAATGAAA 1370911 28 96.4 32 ................A........... AATATCCCAATCAACCAGCGGAAACACTTGTA 1370971 28 100.0 32 ............................ TTTATATGCATGTATTAAAGACAATCATGAAG 1371031 28 100.0 32 ............................ GAGCTTCAAATGCCGCATTTAATCCGCCTAAC 1371091 28 100.0 32 ............................ ATTAAGGGCGAGGTTAGAGTGAGAGCGAAAAG 1371151 28 100.0 32 ............................ AAATGGTAAAGCGGTTGCATCTTTTAGTTTAC 1371211 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TACAAGCCGCCAATATCGCCAATTATTATGGCGTTATCAGATAAAGCAAAGTTTATCTCGGCGAGGTAATTGCTGGGATAATGCGCCGATGGAGCGATTTTTTCGAAGTTTAAAGACAGAATGGGTACCCATTTTAGGCTACCGTAATTCCATAGAAGCACAGCAAGAAATAACACGATATATCATCGGGTATTATAGTCAGCTTAGACCCCATCAATATAACGGTGGCTTAACACCCAATGAATCAGAACGATTGTATTGGGAAAACTCTAAAACGGTGACCAATTTTTGTTGACCACTCCAAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGCGCTTTCCAATAAGCTGTACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAATAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGAAGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGTGAGATGATAGGCTGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2801459-2801251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2801458 28 100.0 32 ............................ CAATCATTTGAGCTGATTGCGCACCGCAATTA 2801398 28 100.0 32 ............................ GCCATTACCCTCTCTGACTTCGATAGCAAGTT 2801338 28 100.0 32 ............................ TGTGTGAGGTTGATTTACTGGTGCTTGATGAC 2801278 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTCTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACATGGAGGTTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2808866-2808598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2808865 28 100.0 32 ............................ GGCGCATTTTTTGCAGGGGCAATCGTTGTTTT 2808805 28 100.0 32 ............................ TGACAACCCTAGCAGACGGAGGGAATGTGTAC 2808745 28 100.0 32 ............................ AAACTTACCCTCTTTCACACCGGCAAATAAAC 2808685 28 100.0 32 ............................ ATAAACATTTGTAGTTCTCCGCGCTTACCTGC 2808625 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTTCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : TTGGCGATATCGCACTCATGGATGATTTTTTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2827788-2827340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2827787 28 100.0 32 ............................ ATTAAACAAGGCATCAATAGCCATTTGCTCAT 2827727 28 100.0 32 ............................ TGACTTCGGGGCGATGTGATCATGGTGCGAGT 2827667 28 100.0 32 ............................ TTAAAGCAGGTGCGCGCTTCTATTTTCGCGCT 2827607 28 100.0 32 ............................ ACTTAGCTCAGGAATTAGTAGTATTTATGTCA 2827547 28 100.0 32 ............................ TATTGCCATGCCAGCTGACGCACCACCAAGAC 2827487 28 100.0 32 ............................ ATACAAACAAGGCTCACAACCTGCCTCAACTG 2827427 28 100.0 32 ............................ TCTATAAACACGTTTTGGATAGCAATTATCTT 2827367 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAATTGCGTAATATGTAGGTCAGGCAGGGCGCTGTATAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGTGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTTACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : CAGATAGCAGTGTGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACGTTCGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAGCTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGTTGTAGAAACATGGGGTATGGGGCAATTCCTGCGGAAATCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2951600-2951211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2951599 28 100.0 32 ............................ TGACAAAGATTATTTTTTCAAGCCTTCATTTG 2951539 28 100.0 33 ............................ ATCACGGAAGTGATTGACGCAAAGTTACGCTAC 2951478 28 100.0 32 ............................ ACGATTTACATATAGTGATATCCGTCTAACAT 2951418 28 100.0 32 ............................ GTCCGCATTTGCTATTGGAGTGTCATCAAGAA 2951358 28 100.0 32 ............................ TTGCTGGACCTCTTCATGCACTGAGTCTCGCC 2951298 28 96.4 32 ...........T................ GTTGTTGTTCGTGTTGAACAAGGCGAAACCGA 2951238 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGGCTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AATGAAACATCTACTTGATTTTATAATATTTTTCAAGGTGACCATTTTGGCTTGTTCTATAAAATACAAAGGTAGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGCTAATAGAGGCGAGGATTTATCAATCGGCTTTGTAAATACAACTGGTTTATATGAGACACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTTAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTGCGTTGCGGCTTCTTTTCCGTCAGTTAGATGGCCCATTATCCGGAGGAGCGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTGTATTATCAACGATAGCCCTTGGTCAACCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2960972-2960566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065420.1 Providencia sp. 2.29 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 2960971 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 2960911 28 100.0 32 ............................ TGCAAACATGGCATTTATCATTGTCATCTTTT 2960851 28 100.0 32 ............................ TCTACGATGCGTACTGGTAAGACTGCTAGTGC 2960791 28 100.0 33 ............................ ATCATCACGAATACACCAGGCTATCGAGTAAGG 2960730 28 100.0 32 ............................ CAGAGCAAGCGAAAGCTAAAGAAGTTTATGAC 2960670 28 96.4 49 ..............G............. TAAGACGCGGGTTCAACTCCCGCCAGCGCAGTAATAAAGGGAAAATAAA 2960593 28 67.9 0 AC....ATTG.......A..A.....C. | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 94.9 35 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGCGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : TAAGGCCAACGGCTTAGAAGGCCGTAGGTCACATACATAAACGTATAGGCAGTTATCCATTTATTAATATAGATTAAATAAACAAGTATTAACATGTACGTTTAAATACAATTAATAAGTTATTTTTGATAAAACGCTTTGCGATCAGCTTCCCAAAATCACCATGTACTCTTTACAAACAATGAACAGCTATAGACAACACTTAAGTTAAACTGTATTTAAATAGTCATATGATTTAACCAAGTCAATGGAAGGCTAATTCAACATGGATGACTTTTCTCCCGCTGATTTAAAAACTATCCTTCATTCCAAGCGCGCTAATATGTACTATTTAGAGCATTGCCGCGTTATGCAAAAAGATGGTCGAGTTCTCTACTTCACCGAAGCGAAAAATGAAAACCTCTATTTCAATATTCCCATTGCGAATACAACAGTTTTGCTATTAGGCACTGGCACCTCTATTACTCAAGCTGCGATGAGAATGCTTTCACAGGCTGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //