Array 1 284415-285283 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCKL01000002.1 Moraxella catarrhalis strain 120/402/3 NODE_2_length_346692_cov_13.213706, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
    284415	    28	 100.0	    32	............................	AACCCCAATTTGGGGGCAAGTGTGGACATGGA  	
    284475	    28	 100.0	    32	............................	CATCGAATCGCAAAAACTCACTGTTGATCAAG  	
    284535	    28	 100.0	    32	............................	ATATCGCTAAAATCTGTGCCAAGCGTATCATA  	
    284595	    28	 100.0	    32	............................	GATAAGCTGTACGGGCTAAGCGATACCACTGT  	
    284655	    28	 100.0	    34	............................	CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC	
    284717	    28	 100.0	    32	............................	ACTGTCAATATAAGCCTGCGGAAATTCATAAA  	
    284777	    28	 100.0	    32	............................	GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC  	
    284837	    28	 100.0	    32	............................	GCACTTTCAATGCTTGGTATCTTGCTGTTAAC  	
    284897	    28	 100.0	    32	............................	AAAATTATTACAAGATTTTTGGAAGTTAGCTT  	
    284957	    28	 100.0	    32	............................	AAGAATAATCAGTTTTAGCTAAGTCAAACAGA  	
    285017	    28	 100.0	    32	............................	AATGGGCGGTCAGCTCAGGCGTAAACACAGCA  	
    285077	    28	 100.0	    31	............................	ACCGAGCGTAACCGCATTACCGCGCCATCTT   	
    285136	    28	 100.0	    32	............................	TGAGTTGTACGCATAAAATGCCGTTTTGCTGT  	
    285196	    28	 100.0	    32	............................	ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA  	
    285256	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        15	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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