Array 1 363563-365208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064782.1 Azospira inquinata strain Azo-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 363563 37 100.0 30 ..................................... AGCCGTAGGCGCACAGCAGCACCAGGACGC 363630 37 100.0 30 ..................................... GGACTACGGACTCGCTGCTCATTTGGGGAC 363697 37 100.0 30 ..................................... CCTCGATATGGTGGTGGTGGACAACTGTTC 363764 37 100.0 30 ..................................... ACCCGTCCTTGTCAGGCCGGGTCCAGGTGA 363831 37 100.0 30 ..................................... TGCTGCCGTATTGGGGGTGATCGGTCTTGT 363898 37 100.0 30 ..................................... GCTCAAAGCCTAGGTTCGTCGGATAAATAT 363965 37 100.0 30 ..................................... CAATAGATCGGAGGGAGAAAATGGAAAATC 364032 37 100.0 30 ..................................... CCTCTCTAGCCAGATTCTGGACAAGAACAT 364099 37 100.0 30 ..................................... AATTTTTCCGCGAAGGGTTCTTGTTTTTTC 364166 37 100.0 30 ..................................... GGTGCTGGCGTACTGCCCACCAAGAATATC 364233 37 100.0 30 ..................................... CCACTTATTGAATGGCATATGCCCTAGCTG 364300 37 100.0 30 ..................................... CAGCGTGGCACCGTCCTTGTCACGCTCTCC 364367 37 100.0 30 ..................................... CACGTAGATGGAGAGGCCGCCGTAGAGGGC 364434 37 100.0 30 ..................................... TCGGTGCGGTCTGCTATATCGGAGGACCAG 364501 37 100.0 30 ..................................... CAATTCGATCACGTAGCGGATCATGGGTTA 364568 37 100.0 30 ..................................... CGGATCAAACATATCCTCCACCCCAACGCC 364635 37 100.0 30 ..................................... CACGTAGATGGAGAGGCCGCCGTAGAGGGC 364702 37 100.0 30 ..................................... TCGGTGCGGTCTGCTATATCGGAGGACCAG 364769 37 100.0 30 ..................................... CAATTCGATCACGTAGCGGATCATGGGTTA 364836 37 100.0 30 ..................................... CGGATCAAACATATCCTCCACCCCAACGCC 364903 37 100.0 30 ..................................... CCGTCACCGTGTCACCCGCATGGATGCGGC 364970 37 100.0 30 ..................................... CACCTTCACGAGTCGGGTATCGATCCCGTT 365037 37 100.0 30 ..................................... TCGGCTGCCCGTTGGAGCGCTGACGAAAAA 365104 37 100.0 30 ..................................... CTGGGACTGCTTCTGGATGTATCCGCCTTC 365171 37 91.9 0 ...............................G..GT. | C [365201] ========== ====== ====== ====== ===================================== ============================== ================== 25 37 99.7 30 GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : AATACACGGTCGAGAGCCTTGCCCGGCTATTCGAGGAAGGCAACAGCGAACTCGAACTTCCAGCCTTAATCGGATTGCAAGCTCACCGGCTGGAATGCTAAGGCATGGGACAGGAGACACGACGCTTTATGCGACTCATCGTCTTCTTTGATCTACCCATGGTCACCAAGATAGAGAAACGCGCCTACGTTCAGTTTCGCCGCTTTCTGCTCAACGATGGCTACGACATGATCCAATGGTCAGTCTACGCCCGCTTGCTAAACGGTAGTGATGACCATGAAAAACACCTCAAACGCCTGATCGACAGCCTCCCGCCCGCTGGCTCAATCCGATGCATGACCGTCACGGAAAAGCAATTCGCTGGCATTCGCCTGCTGGTCGGCATGCCACTTTTTCAGGAAAAAAAGGTTCCAGCAAATCAAATGCTGCTGTTTTAATAAACTTTTTCACAAAAAAAAAATCCCTCCCAGCTACACCAGGAGGGATTTTCACTTCGGTCT # Right flank : CCCCCCGGAATTGAGTAGCACCTGACTTTAGAGTCCAATCTTTCAAGACAAGGAGATTGGACATGAAGAAGCGATTCACCGAAGAACAGATCATTGGGTTCCTGCGGGAAGCGGAGGCAGGGATGCCGGTGGCGGAGTTGTGCCGTAAGCACGCTTTCTCCGAAGCGAGTTACTACCTCTGGCGCAGCAAGTTTGGCGGCATGAGCGTGTCGGACGCCAAGCGGCTCAAGGAACTTGAAACGGAGAACACGCGCTTGAAGAGGCTGCTAGCCGAAACGATGCTGGAAAATGAGATCGCTAAGGAAGCCCTGCGAAAAAAGTGGTAAGCGCACCGTCACGACGTGATCTGGTGCGCTATCTAATCGACAGGGGACTCAGCGAGCGAAAGTCGTTGCGTTTTGTTGGCATGAGTCCGAGTTCATTCCGTTACCAACCAGCGACGGATCGCAATGCTGCTTTGAAGGAGAAGATTGTTATGCTCGCCCAACGTCATCGGCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 366447-366818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064782.1 Azospira inquinata strain Azo-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 366447 37 100.0 30 ..................................... TGTCGCCCCAGGGGCTACGCAACGGGAAGC 366514 37 100.0 30 ..................................... TGGAATGTCTACAATCTTATATTCCGGAGG 366581 37 100.0 30 ..................................... CAACAGGCCGCCGCAGCTTCCGGGGAAACC 366648 37 100.0 30 ..................................... TGCCCCGCCGATGGTAATGGTGGCGTTTAG 366715 37 100.0 30 ..................................... GATGCGGTCGCCGCTGGCGTCGAAATTCAA 366782 37 89.2 0 ...........................A..TC....T | ========== ====== ====== ====== ===================================== ============================== ================== 6 37 98.2 30 GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : GATGATGCGACCCACGAAGCAGTCGCGATTGTTCCGGAACGTGCCATCGGCGGCATGCAATTGACCAGAGTGCTTGATCAGTTGGCCGAGACGCGAGGATTGCCCAAGGCGATTCGGACCGATAACGGCAAAGAATTCTGTAGTCGAGCCATGCTGACTTGGGCTCATGCACGGGACGTTCAGCTCTTCCTCATTGAACCTGGAAAGCCCAACCAGAACGCCTACATCGAATCGTTCAATGGACGCTTCCGGGACGAATGTTTGAACGAGCATTGGTTCACCAGCCTACGCCATGCTCAGGTCGTTATCGAAGGCTGGCGCCGAGAATACAACGAGGAGCGACCCAAAAAGTCCCTGGGCCGTTTGACGCCTGCGGCTTATGCCAAATCACTTACCCAGAAATCGGGTAAATTACCCCCGGACTCTAAAGCCCTCTGCTACTGAAAACGGGGGAACGTCGGAGCTACAACGTCTCTTGTTGATGAACTAACTAGCAAAAC # Right flank : TCAAAGGTAAGAAAATATAAGGCAAAAGAAAAGCTCCACTCCCTCCTCACCCCCGTCCCCAAAGAATCATCTGGGTACAACGAAACAACGCAATACGGCGGCCGGTGATTTCGTCGCTGACCACCCCGTCCCAGACCTGGGTGGTTTTGCCCAGGTGCTGGGGGGTGGCGACGCATCGGATGGCGCCTTCTCGGCAGGTGCCCAGGTGGTTGCTCTTCAGTTCAATGGTGGTGAAGGATTCCGCCCCCTCGGGCAGGTGGGCCATGGTGGCGTAGCCGCAGGTGGTATCCGCCAGGGCCACGATGCTGGCGGCGTGGAGGAACTGGTTCGGGGCAAAGTGCCGGGGCTGAAGCACCATGCGGGCACTCAGCCGCCCCTCGCTCAGATCCGTTAGCTCAACGCCCAAATAACCGGGCAGGTAATCCGTACCGATTTGATTCAGGTGATCCAGGGTCACGTCTGCCCGCAATTTGGTCATGGGCTTGTCTCCTTATTTTAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGTAGCTTTCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 2709310-2708561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064782.1 Azospira inquinata strain Azo-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2709309 28 100.0 32 ............................ AACAGCGGGGACGATCTTGTCACCCCAAACCA 2709249 28 100.0 32 ............................ ATTTGGCCCATTTCCTTTAATGCCGTTTGAAT 2709189 28 100.0 32 ............................ TTTCACAATCTTGGCCGCCGCCTCGGCTTGCA 2709129 28 100.0 32 ............................ ACAGGATCATCGTGAGCCTGTCGATCACCCAC 2709069 28 100.0 32 ............................ TTGTCGGCTCCGGCGCTTCGTGTTCGTTCCGG 2709009 28 100.0 32 ............................ AAAAGGTTGTTAAATCATCCGAAAGCCACATA 2708949 28 100.0 32 ............................ ATGCTGGTAGTGATGTCGGGTTAGAGCCCATT 2708889 28 100.0 32 ............................ CCGACGAAGTGGAAACGGTCCATGGGCCTGAC 2708829 28 100.0 32 ............................ TTTTTGGGGTGCGCGGGGGGGCTTGGCGTCGA 2708769 28 100.0 32 ............................ TGCCTGAAGACCGGTGGGACATCCACCTCGAC 2708709 28 100.0 32 ............................ TTGGAGGCCCGCTTGATCCGCCTCACCGCCAA 2708649 28 100.0 32 ............................ TGGCGCTCGGCGACGGTGTAGTCGTTAGCCGA 2708589 28 82.1 0 .............C.........CT.GC | C [2708563] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCCCGGGGGAGTGAACGGGGCAGACAAAAGTCTTTGCGTGGCGCGGGAACTGAAGGAAAGCTTCGCTGCCCTCCAGGCCCATAATCCCCACTCCTACCCCCTCTTCTTCCCCGGGGTACCGGACGGAGAACCCAGCTGCATCCCCTTCCGCCCCGCCGTGGAAGGCAAGGAAAGCGGCTACGGCGGCCTGCCCAGCCCCACGGACCGGGACGGGGACGGGGTCCCGGACGACCAGGACAACTGCCCCGCCCTCTTCAACCCCATCCGGCCCATGGATAACGGCGTCCAGGCGGACTGCAACCACAACGGCATCGGCGACGCCTGCGACCCTACCCCCTGCCCCTGATCCCTCCCCGGGGATGGCAGACCCTTTTTTTCCCCGTCTGCCCACCCCCAGCAAACACGGGCCTTCCCAGCCCCCCGGAAAAAAAGGGTCCAACCAGGGGAAATAGGGGAAAGGCCTTTATAATCGGGACACTGGAGGGAAAACCCTCTA # Right flank : GTCTGGCCAGATACCAGAGGCGGCCCAGCCATTCGTGGAGGGCCAGGCGGGAGTATTCCAGGCCCCGGGGCTGGGGCAGGAAATCCAGGGGGGTATGGGGATGGGGGGTGAAGCCGGTGGGCGCCGGAATGGCCTTGAGGCCGGCCCGTTCAAAGGCGGCCTGGGCCCGGGGCAGGTGCCAGCCGTGGCTCACCAGCAGCACCGTGCCGATATGGTCCCGGGCCAGGAGAACCGCCGCGTTGTTGGCGTTTTCCCGGGTGCTCCGGGCTCCGTCTTCTTCCCAGCGCACCCAGGCGCCGAAATCGTCTTCCAGGGCCCGGTTCATGAGGCGCCCTTCCGCTTCCTTGCCCCCGTCGGGCCGTCCGCCGGTGACCAGGATGGGCAGGCCGGTCTGGCGCTGAAGCCAGGCGGCGTAGCGGAGCCGTTGCAGGGTTTCCCGGGAGACGGTTTCGCCGCCGTATTCGGGGGCCACCAAATCCCGACCGCCCCCCAGCACCACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2903101-2902471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064782.1 Azospira inquinata strain Azo-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2903100 28 100.0 32 ............................ ACCGTCCATGTCACCCAGCAGCCGGGGCAGGA 2903040 28 100.0 33 ............................ AATGCGCGGAGTTTCTCCAGATACGTACTGCAT 2902979 28 100.0 31 ............................ TACCGCCTAACTCGCCCCCCCCCTCACCTAA 2902920 28 100.0 32 ............................ GGCTGGCGGCGGGCCCATCCGGTAAGTTCCTG 2902860 28 100.0 32 ............................ AGTAGGCGGTCCCCAATAGCCAGGGAGTAGAT 2902800 28 100.0 33 ............................ GTTTTGGCTTCCGGCGGGGCCTTAGTTTCCGTT 2902739 28 100.0 32 ............................ AAGCGCATCCCCTACGTTCAAAACGTGATGTA 2902679 28 100.0 32 ............................ TTACGGGGGCGGGTCGTGCTGGTGGCCGGTGC 2902619 28 100.0 33 ............................ TCCTCGGGAGACGAAAATGCACATCGAATACGC 2902558 28 100.0 32 ............................ TCAACAAGGCGGGGACGTACGAGCGAATAAAA 2902498 28 89.3 0 .......................CCC.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AACTGGAGCGGCTCATGGCCACCCCCTGGCTGCGGGGCATGGAAGACTACCTGGAGCGGAGCCCCATCCACCCCGCCCCGGCCAATGCCCAATACCGGGTCGTTAGCCGGGTCCAGGCCAAGAGCAATGCGGACCGCCTGCGCCGCCGGGCCATGAAACGCCACGGCCTGGCCGAGGCGGAAGCTGCCGCCCGCATTCCCCTGGCAGCGGAAGAACGGCTGGACCTGCCCTTTGTCACCCTGGGCAGCCGCAGCACCGGCCAACCCGCTTTCCCCCTCTTCATCCGCCACGGCCCCCTGGTGCCCTCCCCCCAAACCGGGGACTTCAACAGCTACGGCCTAAGCCCCAAAGCCACCGTCCCCTGGTTTTGACCCTTTTTTTTCGCTCTTTAAAAAACCGATAAAAATCAGTCCATTGCCCGCCACCCCCAAAAAAGGGGTGGCGCGGGCAATTTCACATTTTTTGTTTTTATATCAATGGATTGGGGAATATTCTGTCTA # Right flank : CCGCCCCCCTTCACTTGATAAAAACACTCGAAAAATCCGTTACTTCCCCCCTTTTTCGTGGCCTGCTTCATGGCCCGACTGCCTATAATTTGGGATATTCTCTGACCAAAGTATGGCGTAGGATGCCCAAGCCCTTTTCCGGGCTTTTTTCATAAAACTTAAAACGGCTTCCCAGTACCCACCCTTTCAGGATTCCCCATGGATACCCCCGCCACAGAAGATAAAACCGGCGACGCCCTCAAGGCTCAGCGCTTCCAGATGCTGGAAGACATAGCCAAAGAATTGGAAGGGGATGTGGTTTTCCCCACCTGCTTTGATGTCACCCTGCGCCTGCGTAAGGTCCTCAACGATCCGGACATTTCCCTCCCCCGCCTGGTGGCCGTTCTCAGCGCCGAGCCCCTGATCAGCAGCAAAATTCTCCATCTGGCTAATTCGGTGGCCTACAACCCCCAGGGTCTGCAATGCCGGGATTTAATGGCGGCTATTCAGCGCATCGGTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //