Array 1 308167-307076 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QYCA01000002.1 Streptococcus mutans strain UAB-19 NODE_2_length_628496_cov_35.8096, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    308166	    36	 100.0	    30	....................................	TTTTTTAATTTAATTAAACACAAAAAAGAG	
    308100	    36	 100.0	    30	....................................	TTTTATTTATAATTAAAAGATTGAGGTGAT	
    308034	    36	 100.0	    30	....................................	TTTTGTTAGATGATGATAACGACTCAGTAG	
    307968	    36	 100.0	    30	....................................	AATGATATCGCCTTACCTTTTGAGTCTCGA	
    307902	    36	 100.0	    30	....................................	TTGCTTTCAAAATGATATTTTCTCCACGTA	
    307836	    36	 100.0	    30	....................................	GCGTTTATTATAGCCTATATAACCATTATC	
    307770	    36	 100.0	    30	....................................	TGAATTAATTGAAAAGTTATATAATGGTTC	
    307704	    36	 100.0	    30	....................................	TATAGCTGAACTGTGTGTCAAAACTGTGTA	
    307638	    36	 100.0	    29	....................................	TGTTTATCACTTCTATTAAAACTGCGTTT 	
    307573	    36	 100.0	    30	....................................	TCCTGAAAAACTCATGAAAGCGTGGCTGTT	
    307507	    36	 100.0	    30	....................................	AACAACGCAATCCAAATGCCGTTTTGTATT	
    307441	    36	 100.0	    30	....................................	TGTAAAATCGAAAGTAACTGCATTAGTCTT	
    307375	    36	 100.0	    30	....................................	AAGATTTGCAAGATGACAAATCCTAAACCA	
    307309	    36	 100.0	    30	....................................	CTTACCTGTGTGTCCACTTTGGATACATTT	
    307243	    36	 100.0	    30	....................................	TTCTTTGGTTCTGCACTTTGGACGAGAACC	
    307177	    36	 100.0	    30	....................................	AATTAGAAGTAAAATTTGAACAAGCGAGGC	
    307111	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGCTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG
# Right flank :  AAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.5   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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