Array 1 56446-55802 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDX01000300.1 Streptomyces sp. NRRL WC-3723 P436contig37.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 56445 33 75.8 28 ...G....T.....G....A......T..TC.A GTGCCAGGCCGGCGGTGCGGGCCGTGGT 56384 33 87.9 28 ..............G.........C....C.T. GTTCCGCATCCCTTGCCCGGACCCTGTG C [56355] 56322 33 84.8 28 TC...........C...............TA.. TGAAGCTCACGTCGACGGGTGCGGGAAC 56261 33 81.8 28 ..T........T.C...............T.TT CCAGTGGCTCCAGCGCGAGGCCGCAGCC 56200 33 84.8 28 ......T.T..................G.GA.. AGACGCCTGCGGCCATCTAGAGGCAGGC 56139 33 100.0 28 ................................. CCCAACGCCAGAGGTTCCGCGGGACACC 56078 33 90.9 28 .............................T.GA TCCTGGTTCCGCCGAACCGGCAGACCTG 56017 33 90.9 28 .............................C.GT CCCTCACCGAGCGGGAGTGCATGATGAT 55956 32 97.0 29 .............................-... CCGTTCGGCTACAACCAGGACGGCAACCC 55895 33 87.9 28 .............G...............CCT. GCATCAGCGCCGCCATCATCGTGTCCGA 55834 33 87.9 0 .......T.....G...............GT.. | ========== ====== ====== ====== ================================= ============================= ================== 11 33 88.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCG # Left flank : AGCCCAGAAAAACAACTCAGGAGTTGTACAACCTCAAACCCGTAACTGCGCTCACCGGCCCAGCCGCCGTGGAATGGTGGCAACGCCAAGCCGAACAGTCAGGTCTAAAAGTCGGCACGGTCCACGCCACACGACTAGCCGCAGCAAGCGGCCTAAAAGCTCAAGGCAAGCAGCGCATCCACAACACCCGAACCAGATTCGAGGGCGACGCACTCATCAGCGACCCGGAGCTCCTGCGCCGCCGAATTGCAGAGGGCATAGGCAGAGGCAAAGCTTACGGCTGCGGACTGCTCAGCCTTGCACCTGCAACAGCCAGGTGACCGCGATCACGACCTGGGCCGTGAGGCGCGCAGGCGCCTCGCCGCCCCCATCTTGGCCATCCTTCCCGCGTCGCGGAGTCCCGGTCCTTCCCCTCTATTATTTGCGAGCCCCCGGCCCTCCCTGCCGACGAGGTGGGATGGTGTTCGGCCAAGCGGAAGGTGAAGCGAGAGCGCCGCAAG # Right flank : CGGAGCGTGCCATCGCTCCGGAGAGCGGGCCCTCCGGAGGAGACCCGGTGCCTGCCCGAATCCTCCGCCGAATGGTCCTCTGCGCGTGTCGACGATCGGACTTAGACACGATCTCATTTGGTGAGTCGGCGGTAGCAGATGAGGGTGCAGGCGATGCTGGTGAAGGCAAGGAAGTGCTCGGCTTTGCGCTCGTAGCGGCGGTGTAGGCGGCGGCAGCCGGCGAGCCAGGACATGGTGCGTTCGATAGTCCACCGGTGGCGGCCCAGCCGCTGCGAGGACTCGATTCCCTTCCGGGCGATGCGGTGGGTGATCCCGCGCTTCCGTAACCATCGCCGCAGGTGGTCGTAGTCGTAGCCCTTGTCGGCGTGGAGCTTGCCCGGCTTGCGCCGTCGCCGACCACGGCGGGAGCGGATCGGCGGAATGCCTTTCACCAGCGGGATCAGGGCCTGGCTGTCATGGAGGTTCGCCCCGGAGATCCCAACGGAGAGGGGCAGACCGGT # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 64759-67159 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDX01000300.1 Streptomyces sp. NRRL WC-3723 P436contig37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 64759 33 78.8 28 CC......T.........A.A........T..A CCGGCAGCAAGCTCACGCCGTTCTCGTT 64820 33 87.9 28 A.......................C.....T.C AGGCGCTGGCCAAGCAGCGCGACTCGGT 64881 33 90.9 28 ......T.......................T.T ACGACTACCGGCACGAGGCTTTGGCCTC 64942 33 84.8 28 ............A...........C....AT.C TCACGGTTCGCTGCCGGAAGCTGGGTCC G [64959] 65004 33 100.0 29 ................................. CCATCGTGGTCCCGAACCACATGCTGGAG 65066 33 81.8 28 ...............A........C....GATT TGCACCAGATCACGGCTGACGCCGCTGG 65127 32 87.9 28 ........................-C.....CT GGGTGCCGAACCGCATCGTCACGGGCGA 65187 33 87.9 28 ....................A........G.CT CACCGCCCAGCAGTACCACCGCATCGTC 65248 33 90.9 24 ..................T.........A...A CAGAAAGACCAAGGTCTCCATGGA ATCC [65277] 65309 33 84.8 27 .....A..G.........A.....C....T... GGGTGGAGACGGGCTGACGTCTCCCCG 65369 33 81.8 28 ....C..T....A................T.CT GGGGCTGGAGCCAGTAGGGCGATGCGTC 65430 33 93.9 28 .............................A..C CCGAACCCGCCCAGCGGGAATCCCAGCG 65491 33 87.9 28 .........A..............A....G.T. CGGGCGGGGACGCGAAGGCACAGCAGCG 65552 33 93.9 26 .......................C........A GACACCGCCTCACCCGGATACCGGGC AC [65581] 65613 33 90.9 28 ........................C....TG.. CCTGGTGCAGGCGCCGCTCGGACCGGAC 65674 32 78.8 28 ......T..........-......C.T..TG.A CGTTCTCCCGGCCGGCGTTCGTGGAGTT 65734 33 84.8 28 ........T..............AC....TG.. AGGCCAGTCTCTCCGCTCCCTCCAGCGT 65795 33 90.9 28 .......................AC....A... GGCGGGTGACGATCACCCCGTCGGCGGC 65856 33 75.8 10 .......G......G.T.......C....TACA ACAGCTGGTC Deletion [65899] 65899 33 100.0 28 ................................. TCGACCTCCGTCGGGTTGAGCCGACGCC G,AGG,T,T,G [65902,65906,65913,65915,65917] 65967 33 87.9 28 ...G..............A..........A..C GGCGGCCCATGCGGGCCTCGTACCAGCG 66028 33 84.8 28 ........................C....TTCC TCAAGCCCATGCCGTCCTCGGCCGTCCG 66089 33 93.9 24 ......G.................C........ GAACTTCGGCGCCACCTTCTCCCC GACT [66118] 66150 33 87.9 28 .........A..............C.....T.C CCGAGGGGCACAGGGCGATCGTCGAACG 66211 33 93.9 28 ............A...................T GCTTCTCGGCGACCTTCTGAACGGCCAG 66272 33 87.9 28 ........................C....T.CA TCCGCATGGCTTCGCCGATCTCCCGCGC G [66281] 66334 33 93.9 26 .....................A.......G... CATGAGGCCGGCGTACGTCTCGGCCT C,A [66343,66365] 66396 33 93.9 28 ..............................A.A CCGGGTCGGGGCACTCCCAGGTCGGTGC 66457 33 90.9 28 ..........T...................T.A AGGCCGGGGTCGACTACATCTACTGGCC 66518 33 84.8 28 .........................A...GGAT AGATGCCGCCGGCCTGGCTGGTCGGGCC 66579 33 87.9 28 ...T...............A........C.A.. AGACGAAGTTCCTGACGCTGGAGTCGTG 66640 33 90.9 28 .................C...........A..A AGGCGTATCGGAGGTGGCTGGGCTTGTC 66701 33 93.9 28 ..............................T.C GCTACCAGGGCATCACCCGCTACGTCCT 66762 33 87.9 25 ...............A............A.TA. TGCAGCTCGCCCAGGCTCTGCCCCA CGG [66790] 66823 32 87.9 28 ............T....-......C.....A.. AGAGCTTGTTAGCGCTGATGCCGTTCGC 66883 33 90.9 28 .............................GTC. ACCAGCGGATCTACGACCTGCGACACGA 66944 33 93.9 28 ..................A............C. GCAACCAGACCGGGCTGAAGGAGGAGCC 67005 33 87.9 28 ........................C....T.CA CCCACAGGCGCTCGTACCCATCCGGACC 67066 33 93.9 28 ....................A......T..... TGGACAACCCCTTCGGAGGCGTCTCGGA 67127 33 84.8 0 T............................AACC | ========== ====== ====== ====== ================================= ============================= ================== 40 33 88.9 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : TCGGCGACAACTTCCCCAGATCATGCACCCCGCACAGCATCGACACCCAGCCCACCGCATCACCCAGCGGACCGAACGCCCGCTCCAGCTCGCCACGGCAATACGGCCCCACCAGCACATCGACCAGGCCCTCAGCCACCACCGCCGTATCCAGCACATGACAGATCAACGGATGAGGAACCCGCCCACCACCCGCCTTACCCCACCCAGCCCGAACATCCACCACACCACCAGATCCAACCCCAACCACACCTCCTATCCAAACCCCCAAACGCCCCACGCAAGCAGCCTTCACTCCCCATCACGCACCCCAGACCACCCACACCAGACGCTAGATTGAACACGCACGGGCCCCGCACCGAACGCGCCTTGACTCGACAACACACCACAACACCACCCGACACCCCCACCTACGCGCTACACCGACACCCCCTAGCCAAGACACCACACGGCAAACGGTGAAGAACTAGCGCACAGCGGCCGCAGCAGAATGGGCCCCG # Right flank : CCTCGTCCCTCACATCGGGCCCAGGACGGGTTCTCCCCGTCGACGCGGACATCAGCATGGTGCTGGTCGTCGTGGTCGCGTAGCCATGGCACCAGGTAGCGGTGCATGTGGTTGCAGGCAGCCCGAGCCCGCGCCGCAGGGCGGCACGGGCCTGATTGGACTCGCAAAGGCGGTGGATGTAGCGGACGAACCGGTCCGAGACGCGGACGGTCGAGGTGGTCGGCGGGGCAGATGCCGCCGGCATGGAATCGGTCATGAGACGTCCCTGGTACGCAGGAAAGGGTGGTGACGGGCATCGGCTGTGGCGCGGCCGGCCGGGGTCAGCGCGTGGCGGACGGCTGCAGCAATGCGAGAAGGAGGCTGCGGGCCCGGTGCCGGGCGCGCAGCCACGCGGATGTCTGCCCGGTTGGCCTGTCCGATGGCCTCGTCGAGCGCGGCAAGGGCTGCATCGACGAACGGTTTGTCGACTCCCTGTGCGGTGTGCCCGGGGGTGGTGAGCT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 201-1516 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDX01000369.1 Streptomyces sp. NRRL WC-3723 P436contig95.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 201 33 93.9 28 ..............................A.A CCCGCAACGCCCTGCTCGATGCCCTGCT 262 33 93.9 28 ..............................G.A TGGCGTTCATCGTCGACCGTGGCCGGGA 323 33 93.9 28 ...T.........................G... TCACCCCGGCCTTGATGCCGCCCCACAC 384 33 93.9 29 ..............................A.T GGTTCAACCAGCGCATCGGCCTGCTCCGA 446 33 93.9 28 .............................T..G CGCCCATGAACGCCTGGACGGGGGCGTG 507 33 93.9 28 .............................G..T CGATCCTCGACGTCCGTAATCCGCCGTC 568 33 93.9 28 .............................G..G GCCGGCTGCTCGCTGAACTGCCCGACCA 629 33 93.9 26 .......T......................T.. GGCTCGCCCGGCTGCAAGTGCACCGT TG [658] 690 33 93.9 27 .............................G.A. CACCGGCTTCATCGTGATCTTCTCCAA G [720] 751 33 90.9 28 .............................G.CT ACGAACGGCAGATCGCTGCCCTCGAGGC 812 33 100.0 28 ................................. TGGGGCAGAAGCGGATCAAGCTCCTCGC 873 33 97.0 27 ................................G CGGCCTGGAGACCCGGTTCGACCTGCC C,G [882,903] 935 33 90.9 28 ............................TGA.. TGCAGGTTTTCGGCGGGGGTGCGGCGGG 996 33 90.9 28 .............................TA.T CGGCCAGAGCAGCGTCCACCTGCGTCTC 1057 33 93.9 27 .............................A.A. GCAGGAGACCGTGGAGGCCCAGATCCG G [1087] 1118 33 97.0 28 ................................T ACAAGCTCCTCGTACAGGCGCTCGGGCG 1179 33 100.0 28 ................................. CGGCGGATTCGGTGCGGGCCGACCTGGA 1240 33 93.9 28 .............................AA.. TCATCGAGGCCCGCCGCGAGGTCGAGCG 1301 33 93.9 28 ........T.......................G TTGCAGAACGGAGCCGACGAACGAGGCG 1362 33 90.9 29 .............................GTA. GGACCAACCCCTCCCCTCCCCCACCGTGC 1424 32 93.9 28 ..-..T........................... CGAACCGGTTCAGCGTGTAGAGCTTCCG 1484 33 84.8 0 ...............A........C.....GCT | ========== ====== ====== ====== ================================= ============================= ================== 22 33 93.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : CCCGACACCCTCGCCCCCTCACCCCACGCAGCAGGCCACACCCCACCACCAGGCCGGCATTCAACCACCCCCCACCGACACCACCGCCACCGTTCCCACCCCCGATAAAATGACAACGCGCAGCCCCGCCCACCGCGCCACAGAGCGCCCACCAAAGCAAAAGAAAAGCAAAGCCCTTCCTGAACTCCAGGTCACAAAGGG # Right flank : TTGGATTCGGCCGTCTTGATCCCGAGGCCGTCCTCCTGCCGACGCGAAAACGTGGCTCACTTTCTACGGATCCGGCCCATGGCCTGCTCGGCGACCAGGCGGGCCTCGCGGATGTTGTCCAGCCAGGCGCCGCACACCGAGCGACCTGCGAGCAGCGCCTCTCAGCAGATCTGTTCGTCGTCCTGTCGCACCCACCAGTGAGATCGCAGGCTGGCCGTATCTTTGCCCCGTACTTCGCCCGTCGAAGTGACCTATCGCCTGTCGGGCCAGGCAGCCAGCACGTCACTGGTTTTTTCGTCGGTGAGGGTGAGGCGGGCGCCGGGCATACTCCCGTACTCGCCGACCCAGCGGCGGAACTTGTCCCGCGCCACCTCCTCACTGCGCCACCAGCCGTGCTGCACCGGCCGGCCGCCGGATTCGAGCAGCAGGTGGTAGCGGCCGGCGCCGGTCATGCGAGGCGGATCCCCCGCGACCGCCCCGGCTCGCGGACGATCGCGCGT # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //