Array 1 70038-68905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 70037 29 100.0 32 ............................. TTGACCGAATACGCGTACCCCTCGAAGGAGTG 69976 29 100.0 32 ............................. GCGCCTGAGGGGGCGCAGGTGGACCCCCAACG 69915 29 100.0 32 ............................. ATCACGCGGCGCCCCTTGCGGGCGAGGGCTTC 69854 29 100.0 32 ............................. CTGGTGGAGCAGTCCGGCACGGACGACGACTC 69793 29 100.0 32 ............................. CTCCGCCCGTCCCTGGCCGCCTACGACACCCG 69732 29 100.0 32 ............................. GCGCCGCTCTTGACGTACCGCGCCGCCTCGGA 69671 29 100.0 32 ............................. CGACCGGAGGGCCGCAATAAGGAGGGCCCCCA 69610 29 100.0 32 ............................. TCCGAGGCGATTTACCAGAGGATCGTGAAGGG 69549 29 100.0 32 ............................. TCCCGACACCCCCGGGCTGACGAACCGGTGCA 69488 29 100.0 32 ............................. TACCCGAGGATGTCGCGGTCCTTCTCGTTGTA 69427 29 100.0 32 ............................. TGGGTGGCCCTGTACCGGTACGCGCGCGCTGA 69366 29 100.0 32 ............................. TACGGGTCGATGCCGCCCGCCTCGCCCTTGAT 69305 29 100.0 37 ............................. TTTCGGCCCCCCCTCCCCTCCGACCTGCGGAAACGTC 69239 29 100.0 32 ............................. TCGGCTCGGCCTCGGGCATCGGGCCCGGCAGC 69178 29 100.0 33 ............................. ATGCCTGCGCGGGGCTGGACCGACCTGGAGGTG 69116 29 100.0 32 ............................. TGCCCGGTGTGCGGCGGCGACATGCCGCCCAC 69055 29 100.0 32 ............................. CCGCGCGACGGCGAACTCTGGGACGTGCTGTG 68994 29 96.6 32 ...........A................. ACCGCGAGGTCGGCGAGGAGGGCGTCGCGCTG 68933 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.6 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGGCTACTCCCGCGCATCGTGGGGGACATCCAGTCCTTGTTCCAACCCGACTTCACCGCCCCGGACGACCTGGAAGAACAGGTCGTCGACCTGTGGGACCCCGAGACCGGAAACATCCCAGGCAGCCGAAACCACGCCCCCACCTGACACCGCGAAAGACGCCATGCCGAACATGACCGTCATCAGCGCCACCGCCGTTCCAGCACACCTTCGAGGCGCTCTGAGCCGCTGGCTGCTCGAAATCACACCATCTCTCTACATCGGAACCATCTCAGCCAGAGTCCGAGAAGAGCTATGGAACAGGACCACCGCGAGCATCACCGACGGAAACGCCGTCCTCGCCTACCCATCGAGCTCAGAACAGGGTTACACCGTTCGCACCGCAGGTCCGCAACGGCGCTCCCCCGTTGACTTCGAGGGCCTCGTCCTCATGGCCTTCAAGGACACTGAAGGAAGTAAAGAAACTGCAAAGAGCGGGTGACGTCGCAGGTCACGAAGG # Right flank : ATCCCGCCCCGGGGCATCACCGAGGGTCTGCAGGATGTCAGCGTGACCTCGCATACTGAGGTGCGGGGAGCGCGCTCGTGCCGTCGTTAGTACCTACGGCGAGGGCTAAAAGGGGGCACGCGCGTGACGCGCATCAGAGGAGGGGGCCCGATGGCCAGAAAGCCGGGGACGCCGAGACCGACGTCCGCCGTAGCCGTGATCAACCCGAAGGCCCCCGCAGCAGACAAGGACCTCCTGCGAACCGCTCAACGAAACCCGGAAGCTCTCGACCGCCTTCCGGACCTCGGCGCCCCGACACACAAAGGGCGCCTTGCCCTCGGCGCCGTCACAACGGGCGGCGCGGGCGCCTTCTGGGCGTTCCTCAGCCATGGCGACTCCGGGGCCGGCGAGCAACAGAACCCGGGCGGCCTACTCGCCAAGGGGCAGGAGTTCTTTGCCGTCGTCCAGGACCTCGCGGGGCTGGCAGCCCTGGGGGCCGGTCTCGCAACGGCTGCGTACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79944-81497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79944 29 100.0 32 ............................. CGCCTGTCAGCCGCTCCCGGGCCCCGGAGTGC 80005 29 100.0 32 ............................. GGGCCCTGGGAGTCGGCCTGCGCAGCGCAGGG 80066 29 100.0 32 ............................. GAGCTCGACCACCTCGACGACGTCCCCGAGGG 80127 29 100.0 32 ............................. GTGCTTGAGTGCGGCCCAGACCGACGCGGACC 80188 29 100.0 32 ............................. GACGAGGAGCTCCCCGCGGTTCCGCTCACCCG 80249 29 100.0 32 ............................. TTCGAGGGTCAGCTCGTCGGGCGTCGGCGCCG 80310 29 100.0 32 ............................. CTCCACGGAGCGGGCCTGGACGATCTCCGGAC 80371 29 100.0 32 ............................. TTGTGGTGCTGCGCGGTGACGCTGCCCGGGGG 80432 29 100.0 32 ............................. TCCCACCGTGAGCCGGTTCGCCGCCGCCAGAA 80493 29 100.0 32 ............................. CAGGCCGTGACGTACCAGCCGGATGCGTGGGA 80554 29 100.0 32 ............................. CCAGGCAAGCCCCCGACGATCGGCCACCGAAC 80615 29 100.0 32 ............................. CACCACCCTCCGACGCGGCCTCACGCAACGCG 80676 29 100.0 32 ............................. CCGGGGAAGGGGCCGGGCCGCTTCTGGGGGTA 80737 29 100.0 32 ............................. GACGCCGCGACCGCGCACGGGCCGCTCCGCAC 80798 29 100.0 32 ............................. CGGGTCACCAGGTCAGTGTGGCGCCTGACGGC 80859 29 100.0 32 ............................. GCGTACGCCGGTGGTCGACTTCTTCGCGCCGC 80920 29 100.0 32 ............................. AGCACGCCCGCGGCTGCACCGCGCTCCAGGTC 80981 29 100.0 32 ............................. ACGGAGTGGCGCGGCGACAAGCCCGGCCGGTC 81042 29 100.0 32 ............................. CGGCCGTGTAGTGGCACGCCTCCCACGCTTGG 81103 29 100.0 32 ............................. TTCGCAGCGCAGGTTGTGGCCGCCTACCGCAC 81164 29 100.0 32 ............................. CCGATGAACCCGTACGATTCTGAGTAGCGACG 81225 29 100.0 32 ............................. CTGCTTGTAGGCGTACTGGACCAGACCCGAGC 81286 29 100.0 32 ............................. TCGATCTGCCGCAGGAGGAGCAGCCGTTGCTC 81347 29 100.0 32 ............................. GCGGTGACGGCGCCGGTGCGGGTGACCGTCAG 81408 29 96.6 32 ............................C TGCTCGTGCTCACCGAAGCCGCCCTGGAGCGC 81469 29 93.1 0 ........................AT... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCATACATCGCGTCCCCGTCCACCACCTTGAACGCCTCCGGGACCTTCACCATGAAGGGCGGCGTGATCTTCCCAAGGTCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGGCAGCCCCAACTCAGCCGCGATCCGCCGGCGCATTCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAGTCCAGCAAATGACAGATCAACGGATACAGGCCGGGAAGCCCATGCTCTTTCCCCCAGAACCGGACGTCCAGCGCGAGGCGCTCACCATTCGACATGAGGGCGTCTTAACACCCCTCACCGACAACCCCTCCTGACCTGTAGTTACGCATGGCTAGCCGCCTCCGTCCGTCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATTGCAAAGGCCCTATAACGCCGCAGGTCAGTAAGG # Right flank : GCACCAGATCGGCCAGCACTATGTCCTTCTGCCCCGTGCGGGCGGGCTGGAGGTGCGAAGCGTGCGGAGGGATTGTCGCCCAGGCGGAGGGGACCACAACGGCAGCGGCCGTACGGGACCACGCCGACGTGGCGGGGGCGGCGCCGGCGGTATCGCGGAGCGGGCCGGCGGTCTCGTCGCCGGGGGAACGTGGTGGCGTGTGCGTCACGTGGCGGCTTCGATCGGCAGCGGGCGGAGCATGACCGCGAAGTTGGGGCTGTCGGGGAAGGGCTGCCGGTTGCCGACGCGGCGGTAGCCCCATGTCTCGTACAGCTGCTGGACCTTCGGGTGGTCGGGGTCGACGAGGAGGACCGCGAGGTTCTCCGGCCGGTCGGCGAGCAGGGTGTTGTGCAGCTGCTCGGCGATGCCGGTCTTGCGCCAGGCCGGTCGAACCATCAGCTCGGAGAGGCTGAACGTGGCGTCGCGCTCCGGAGCGGTGGCCAGGTGCTCGCGCCACCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 112465-111640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112464 29 100.0 32 ............................. CAGACCTCCGACGCCATCCCGACCGCCGTCCG 112403 29 96.6 32 ............................T GGTCGGAGAACTTATCTCCGCTCTGCTGAATG 112342 29 100.0 32 ............................. GTCGGTGCTTGGTCGCTGTACTGCTCGGTCAT 112281 29 96.6 32 ............................C CCGACCAGCGGGCGCCCGGCCCAGGACGCCCC 112220 29 96.6 32 ............................C TCGCCCTCGGGCCACCCGGAGGCGAGGCGGTT 112159 29 96.6 33 ............................C GCTGCTCACGTAGCCCATGCCCGCCGACCGCAC 112097 29 100.0 32 ............................. CACTCTCAGGAAGTGGAGGTGCGCTCCCTTGA 112036 29 89.7 32 .A......................T...C CAGCACTGGCGCGCCCCTGGCGGGCGGAGGAC 111975 29 100.0 32 ............................. CACTCTCAGGAAGTGGAGGTGCGCTCCCTTGA 111914 29 89.7 32 .A......................T...C CAGCACTGGCGCGCCCCTGGCGGGCGGAGGAC 111853 29 100.0 32 ............................. CACTCTCAGGAAGTGGAGGTGCGCTCCCTTGA 111792 29 89.7 32 .A......................T...C CGAGCTGGCGGAGGTGCGCCTGCTCCTGGTCG 111731 29 96.6 32 ............................A CACCGACGGCGCCCCTCCTCCGACCAAGAAAG 111670 29 93.1 0 ...........................TA | C,G [111643,111647] ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.1 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCACTCACACCTTGACCTCTCGCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTCTGGGAACTCCTCACCAACCGCATCAACGACGGTCAAGCCGTCTTTGTCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGGTAACGCCGCAGGTCAGCAAGT # Right flank : TGTCCTTCGTCAAGCGAGTCGGGGGCTTTTCGGCTCGTAGAAGGTTCCGTCGCGGAGCATGGCGAACAGGACGCTGATGCGGTGGCGGGCGAGGCGGAGGAGGGCCTGGGTGTGGGTCTTGCCGCGGGCTCGGCAGCGGTCGTAGTAGGTCCGGGAGGCGGGATCGTGGAGTGCTGCGAACGCGGAGAGGAACATCGCTCGTTTCAGTTGCCGGTTGCCGCCTCTGGGGGCGTGTTCGCCGTGGATCGACGTGCCGGACTGCCGGGTCGCCGGGGCGAGGCCGGCGTAGGAGGCCAGGTGGGCGGCGGTGGGAAAGCTGCTGCCGTCGCCGACGGTGGCCAGGAGGACTGCGGCGGTCCTGACACCGATGCCGGGCATCGAGGTCAGGACCTGGGAAAGAGGGTGGACCTCCAGCAGTGCCTCGATCCGGGTTTCCAGGGACCGGCGTTGTTCGTGAACGGCGGCCAGCGACTTCGCCAGCGAGGGGACGATCACGTCGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : GACGGCCCCGCGCCTGCGGGGGTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 122779-125741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122779 28 100.0 33 ............................ GCGTCCCGCCCTCGGTGCACTGGAGCCCCGGGC 122840 28 100.0 33 ............................ CGAGGTGTGGCCCTCCCTCCAGTCGCTCGCCCG 122901 28 100.0 33 ............................ TCGGCCACCAGCAACGGCTCCCCATCCCGCACC 122962 28 100.0 33 ............................ GTCGGCTTCACCGGGCAGCACGCGGATGTGCTT 123023 28 100.0 33 ............................ GATGTGGCAGCGGCTCCAGGCGGACTACGGCAT 123084 28 100.0 33 ............................ GGACGAGCAGGTCATGGCGCTGCCGTCCCGGCC 123145 28 100.0 33 ............................ CGGCCAGCGGCCGGAGGGGAGTGGGTGGCGCGC 123206 28 100.0 33 ............................ GGTGCTCGTCCGGCCCGGCCTCCCCGACACCGA 123267 28 100.0 33 ............................ GACCGCGTTCAGCAGCAACGAGATGACCTTGCT 123328 28 100.0 33 ............................ GACCTTGCCGGCGGTGGTGGTCTTGTAGTCCAG 123389 28 100.0 33 ............................ GCGGACATCGACGCCATCGAGGCCCGGTCCCGG 123450 28 100.0 33 ............................ CCATCATCGAGCCGGGCGACGACGCGGTGCGGG 123511 28 100.0 33 ............................ CGAGCCCGTCGCGGGGGTCACGGTCACCGAGGA 123572 28 100.0 33 ............................ GCCTTGAGGCTGGTGACCCGCCCGCGCCCGATG 123633 28 100.0 33 ............................ CGGAGCCGGGCCCTACACGCGTGCGTACGCGTA 123694 28 100.0 33 ............................ CCGACGCTCCGCCAAGGCGCCGGCGGCGCGGGC 123755 28 100.0 33 ............................ GGGATTGGGGACTTCGCGACCTTCCTTCCGATA 123816 28 100.0 33 ............................ CCCTCGATCGCTCAGTTCCTCAGCCTCGTTGAG 123877 28 100.0 33 ............................ GCCCGCAAGGTCCGCGCGGACCCGGTGCGGGCT 123938 28 100.0 33 ............................ TGCGAAAGGAGCTGACCTGACGTGCTGGTGCGT 123999 28 100.0 33 ............................ GCCGCCGCCCAGGAGGCCGAAGCCGAGCGCCGC 124060 28 100.0 33 ............................ TCGCCCGGTCTACCGGGGTCCGGAGCCGGTCCG 124121 28 100.0 33 ............................ TGACCGCCTCACTGGTGCTCGACCCGCAGCTGT 124182 28 100.0 33 ............................ GTGCGCCTGGCTAGTCGCGTGGCTTGCCGTTGC 124243 28 100.0 33 ............................ CCGGTGGCAGCGTGTCAGCCGGGATGGCCTACC 124304 28 100.0 33 ............................ CGTCGTCACCTTGGTTTCCGGGTGGTACGCAGC 124365 28 100.0 33 ............................ GGGGCGCACCGAGCTGGCACGGGAGGACGCACG 124426 28 100.0 33 ............................ GTCGTTGCGGTTCTCACCGAGTTGCGCGGCGAT 124487 28 100.0 33 ............................ GAGGACGTCGCCCCGGTCCCCGGGGACAGCATG 124548 28 100.0 33 ............................ GCCGCCGGGCCCCCCGAGGAGGGCGCCGAGCTG 124609 28 100.0 33 ............................ GCCGATGACCGCCACGGACGTTCTCCCGGCGTC 124670 28 100.0 33 ............................ CCAGCCCATGCCCCCTGCGCGCCCGTCTCCGGG 124731 28 100.0 33 ............................ GTCGGCGTCCTCGGAGGCCTGATCGATGGACTC 124792 28 100.0 33 ............................ GTACGTCGCGCCGTACGCGGACCGGGGCGGGGA 124853 28 100.0 33 ............................ GCGGCAGGAGCCGTCTCCGAAGTTCCGGGCGCC 124914 28 100.0 33 ............................ CCGCCTCCTCCAGGCCGAGATGAAGCTGAGCGC 124975 28 100.0 33 ............................ CTGCATCCCCGTCGTCCTCAAGGTCGCCCCCAA 125036 28 100.0 33 ............................ CTCCACCTCCGCCCGGGTCTTGGGCTGGGGGTC 125097 28 100.0 33 ............................ GGGAGTCGGTGACGCGTCATCAGCAGGAGGGGG 125158 28 100.0 33 ............................ CGCGTCGGCGAGGGTCGCGCGGTGGGCGTACCA 125219 28 100.0 33 ............................ GTTGATGGTGGCCGTGGCCCCCGGTGCGAGCGC 125280 28 100.0 33 ............................ CGTGCCCGCGCACTGCGTCATGTTCGGGGTGAT 125341 28 100.0 33 ............................ GCGGTGTCCGACCTTGTTGAGGCGGCGGCCACG 125402 28 100.0 33 ............................ GTAGACGGTGGAGTGCTCGGTGTTGTTGGCGAT 125463 28 100.0 33 ............................ GTCCGCGTACATGCTGCTGACGCCGCTCACCGC 125524 28 100.0 33 ............................ ACGTCGGCGGGGGTCCGGGGAGAGCCCGAGAGG G [125545] 125586 28 100.0 33 ............................ GCGGGTGGGCGGGTCGCTGAAGGACGCCGCTGC 125647 28 100.0 33 ............................ CATCGGCGTCACGCTGCTGAACGCGGGCCGCGA 125708 28 92.9 0 ..............T.......C..... | A,C,CCC,A [125727,125730,125732,125739] ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.9 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGACACCTCATCCAGCAGGCCCCGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGGTTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAGACACCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCTTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCACGCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCGCAGGTCAGCAAGT # Right flank : CTGCGGCGGGGCTCGCGGGCCACGACGTGTCCTCTTCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGATGCCCTCTCCAGCGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCTAGGGAAGGACGGGGCCTCTTCACGCCTGCTGGGATGCTTCAATCTCGCTGGGGAGCGGCGCGGTCAGCGTGCGGCTGGTCCCGCGCTCGCGGGGGGTGACCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCTGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCACTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCACCGTCTGCCGCGGAGCGCGACCAGTGGTGGCAGAAGGTGCTGGAGCTGCGCCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 132104-133866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 132104 28 100.0 33 ............................ GACGGGTTTCTCGGCGCGCGAGGACGAGTTCGT 132165 28 100.0 33 ............................ GGTCGCGCACGGAACGAGGCGCACGGAACGAGG 132226 28 100.0 33 ............................ ACTCCGCGAGATCATCACCCTGCGGTACTCCAC 132287 28 100.0 33 ............................ AGGCCGAGCTGACTCCGGTGGGTAGGCGCCGCA 132348 28 100.0 33 ............................ GCCCCCGCCGGAACACCCGGCGGGGGCTTCCTC 132409 28 100.0 33 ............................ GACGCGGACGGCGGCGGCTCCGGCCTCGGGGAG 132470 28 100.0 33 ............................ CCCGGACACCACCGAGCAGAGCACCGCCGCCCG 132531 28 100.0 33 ............................ CGAAATCGCGGTCGGTGTCGCCTCGTTGATCAT 132592 28 100.0 33 ............................ CATCTCGGGGAACGTCCAGTCGTGCCCGGGCTG 132653 28 100.0 33 ............................ GCGGGGTTGCCGCGGTCGTGCTTGGCGTACACC 132714 28 100.0 33 ............................ CATCTCGGGGAACGTCCAGTCGTGCCCGGGCTG 132775 28 100.0 33 ............................ GCGGGGTTGCCGCGGTCGTGCTTGGCGTACACC 132836 28 100.0 33 ............................ GCCCCCGGCTGTCCGGGGCTTGCCCCCACCGAC 132897 28 100.0 33 ............................ CTGGACGCATTGGAGATCAGCGTTCCGCCCGAG 132958 28 100.0 33 ............................ GAGTCTTCACGCATCGCTACCGGAGACGACTTG 133019 28 100.0 33 ............................ GGAGCAGGGGGCAGACACATCGTCCCTCAACTC 133080 28 100.0 33 ............................ CAGATTCCCCACACCTATGCATCACGACCCAAC 133141 28 100.0 33 ............................ GGAGTTGCCCATTGCCTCTTTCCGCCCGGCGGC 133202 28 100.0 33 ............................ GCCAGCCGACGTGCCAGCCGCGGTCACCGTGCC 133263 28 100.0 33 ............................ TCACGGCGCGTACGGGCCGGGCGGCCGGGCCGA 133324 28 100.0 33 ............................ GGCAACACCGCCAAGCGGTGGCTCCGACCCTGG 133385 28 100.0 33 ............................ GGTGTGGAAGCTGGCAGCGCAGGTGGGCACCGG 133446 28 100.0 33 ............................ CTTCCCCACGACCTCTGTGTACGAGCCGGCCTT 133507 28 100.0 33 ............................ GTGGCATAGCGGGCCAGGCAGGTTCGCCAGGCC 133568 28 96.4 33 ...............T............ CCAGCTGGTTGACGCGGACACCGGCCCGTTGGC 133629 26 92.9 33 .............--............. GGTCAAGGGCGGTGGCGCCCGGCCGGTGTGGGC 133688 28 100.0 61 ............................ GGGCGCCACGCTGGACATCCCGGCGTTCCCAGTGTCGGCCCCGCGGATCGGCGCCGGAGCG 133777 28 96.4 33 .............T.............. CCTGCGTGACGACGTCACCCAGTCCGTCCTTCA 133838 28 92.9 0 ...........G..T............. | C [133862] ========== ====== ====== ====== ============================ ============================================================= ================== 29 28 99.3 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGCACCGACGACCGTCCGTTCCTCCTGGGACGCAGGCACTGGCGGTTCATGATGATCTTCGTTGTCGCCCTGTCCCTAATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGCCGCCCTGCTGCTGTCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCCAGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCACCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATCCGCTCCCGACCCACGAACGAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CACTCCGTCCCCCGGTTGCCACCCCGCCCCCGAGGCGCTCCGTGCCCGTGTCGTTGCCCATCAGGCGGAACGCGAACGCTACTGCCACCAGGTAGTTGGCGACCAAGCTCCCTGCGCAACCGCAGCGCCTATCACGCGCCCCTCCTCGGCCGTCGGGCTCGCCCTCACCAGTCAGACCGACCGCCTGGGCCGCCCCCGCAGGCTGTCCCTCCCCGACGCGCACCAGGAAGTCCTGCGTCTGGTCGAGTACGTCGCCAAGGATGACGCCGGTTGCCTCGGCGCAGAACAGCCGAGTCCCCCAGACTCTCGCGGTGTGCTCCGAGGAGCCCGCGCCTGATCAGCGGACCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCACGCAGGTCAGCCACCAGTTCGGTGGTGCGAGTTTCGGTGAGGGTGCCGCCATCACCGCCGGTCGCCGTCCACTCGATGTTCCAGTGGGCGGTCACGATGACCGGGTACTCGCCTGGCCGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 135815-136207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135815 28 100.0 33 ............................ TCGGCATCGGATTCGGGACGCTCGCCGTGGCGG 135876 28 100.0 33 ............................ GCGGTGGGATGACGGAGACACGTCGTACGCCAC 135937 28 100.0 32 ............................ CCACGCACAGGGTGACGGTGCCGGGTGGACGT 135997 28 100.0 33 ............................ CTCCTGCTCGGCCTTCAGGCCTGCGACAGCCGC 136058 28 100.0 33 ............................ CGAGCCGGGCGCGGTCTACCGGATCTCCTGCCC 136119 28 96.4 33 .............G.............. GACGTCGCCGCTCGATGGCGACACCATCCGGAG 136180 27 82.1 0 .........-.GTG.C............ | T [136205] ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCCCTGCCTCCTTCATCTGCCGCAGATCCAGACGCAGCATGGCGAGCGCCTCGCCGGACACGTACGTCTCCAGCCGCGTCCCTTCCGGCGACGCCCTCCGGTACGCCACCGCCTGCTCCCGCCACATCCCCCGGTACGCCGCCAGCACCGCCCGCTCCTCGGCCGCCTGCGGGTCCGCCGACGCCGACACCGAGGCCGAGGCGGACGGCTCCGCGCTCGCCTCCGGCGACGCCTTCGGGTCCGGTGCGGCGGCCGGCTCCCCGCCGCACCCCGCCAGGAGCACCACTAGGACCGCCGCCCCGGCCAGTCGTTTCCTGTACATTCGCGCCCCCTCTGTTCACGATGAACCACGCCACCGTAACCGTTGTCGCACAGTAGGTGATCAGGCGTCCCCTGGGGGGACGTAGAGGTAGAGGCGCTGCCATGGTTTCTGCGCCTTCGTGGTGCGTGTCAGCCACCGCGAGGACGGTCCACGCGGCGCCGCTGAGGTTGAAAGACAA # Right flank : CACTCCGTGCCCCCGTTGCCACCCCGCCCCCGAGGCCGCTCCGCGCCCGTGTCGCTGCCCATCAGGCGGAACTTGACCAGCTGTTGAACCTGAGATGATGACTGGCACCAGATAGTTGGCGACCAAGCTCCCTGCGCAACCGCGGCGCCTATCACGTGCCCCTCCTTGGCCGTCGCTCTCTCACCGGTCAGACCGACCGCCTGGGCCGTCCCCGTAGGCTGTCCCTCCCCGACGCGCACCAGGAAGTCCTGCGTCTGGTCGAGTACGTCGCCAAGGATGACGCCGGTTGCCTCGGCGCAGAACAGCCGAGTCCCCCAGACTCTCGCGGTGTGCCCTGAGGAGCCCGCGCCTGATCAGCGGACCGGGTCGGCGGGTGTTGAGGACCTGCGCCTCACACAGGTCAGCCACCAGCTCGGTGGTGCGGGTTTCGGTGAGGGTGCCGCCATCACGGCCCTCGGGGAGTATCGGAACGGAATTTAGCGATAGCCGCTGATCACTCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 141962-142174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002272.1 Streptomyces sp. GBA 94-10 plasmid pGBA1 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141962 29 96.6 32 .......T..................... ACGAGGGCGCCCACGAACGCCTGGAGGTAGGT 142023 29 100.0 32 ............................. CAGCAGGGCGCCAGTCCTCGGCGCCGCAGTAC 142084 29 96.6 32 ............................C ACGGCGTACTGCCCGCCGGCGTACGCGTCGTG 142145 29 93.1 0 .............C..............A | C [142169] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : ATCCCGCGTACAGGGTCTGCACGGGAACGGTGAAGCGCACGCCGTCGGCGGAGGCGACCAGGCCGCCGCCCCACGCCTTCACGACGTCGATCTTCGCCTGGGCCTTGATGAACAGGCCGTTGGCCGTCGAGATGTTCTCCGCCCGGAAGTAGCCCTGGTCGACCTGGACCAGACGGCCCCGGGTCAGCGCGGGCACGTCCGGCTTGATGACCGGGATCAACCCGACATTGCACGCCTCCGACAGCAGCACCGCGCACAGGCTCGTGGTGAAGCCCCCATACCGGAGTCGGCACCGGAGATGTGCGTGAACGCGTCCGCCATGCCCGTCAGTTCGGCGACCTCCAGCAACAGCTCGGGGAAGTCCACCCGGGGCAGCATGCCGTTGACCAGCTGCCGGAACGGCGGCATGAGCTTGGGCTCCTCGGCCTTGCCGAGCTTGGCCGGCTTCAGTTTCCCGCCCACGACCTCCATCGGGGAACCACGAGTTGGCCCGGTAGTGG # Right flank : ACTCCGTGCCCCCGTTGCCACCCCGCCCCTGAAGCGCTCCATGCCCGTGTCGTTGCCCATCAGGCGGAACGCGAACAGATGTTGGACCTGAGCTGATGACTGGCACCAGGTAGGTAGTTGGCGAACAAGCTTGCTGCGCAACCTCACGGCCTATCACGTGCCCTCCTCGGTCGTCGGTCTCTCTCACCGGTGAGACCGACCGCCGAGGCCCCCGGCCGGCTGTCCCTCCCCCGACGTGCACCAGGAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGCCGTTGGCTCACACAGAGAAGCCGAGTCCCCCAGACCTTCGTGACGCAACCCTGAGGAGCCCGCGCCTGATCAGCGGATCGGGTCAGCGGGTGTTGAGGGCCTGCGCCTCACGCAGGTCAGCCACCAGTTCGGTGGTGCAGGTTTCGGTGAGGGTGCCGCTAGCACTGCGAGGTCGACACCGGAAAGCGGCGTGCTGGACTCGGTCATGAACTGGG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //