Array 1 2409761-2411284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017968.3 Paenibacillus polymyxa strain YC0573 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2409761 32 100.0 37 ................................ TTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGG 2409830 32 100.0 37 ................................ AATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGG 2409899 32 100.0 37 ................................ AAGTCAGCCACTGAAATATTCGATACTACGACTGCCA 2409968 32 100.0 39 ................................ AGACCATCAGGAACGTCCATCAAAAGCATCCTGACGCTG 2410039 32 100.0 37 ................................ ACAGATGAACTCACCATGTCGGCTATCCTTGTATAAA 2410108 32 100.0 33 ................................ AACCCTATACGAAGAAATATTGAAAATAGTGCG 2410173 32 100.0 36 ................................ GTCTTCGAACCATTGATGGCTTGTCTGCGTGACGGC 2410241 32 100.0 34 ................................ CACTTCGCAATCTCGGTATATACAACGTTGGATG 2410307 32 100.0 35 ................................ CAGTAAACTGTTCATATGCATACCGGAGTGTTGTT 2410374 32 100.0 38 ................................ AAAATGCAGTTATCTGCTTTTACCTAGCGAACGAACTG 2410444 32 100.0 35 ................................ AACGGCGCAGTCGCAAGCGTGCGGAGATACGAAGA 2410511 32 100.0 37 ................................ GACAGGCTGGCTTGTGTATCCGTCTCACGGTGAGCAG 2410580 32 100.0 37 ................................ TTGATGGACAAAGGCATCATCACAGGTGAAGCGAGCA 2410649 32 100.0 36 ................................ CTCGATCACGTAAAGAAACACGCTCACACCGAGCGT 2410717 32 100.0 36 ................................ TTATCCCCTATGGGGCTTAATCCGTTATGCCTGGCA 2410785 32 100.0 35 ................................ CTACTAAACGGAAGTGCATAGTGTACTCATTATTG 2410852 32 100.0 35 ................................ AGATTCCGGTACGCCATAGTCGGAAGACAGATACT 2410919 32 100.0 33 ................................ CATCAGCCAACGCTATGATCTCGCCTGTATCTT 2410984 32 96.9 39 ..G............................. CCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAA 2411055 32 100.0 36 ................................ GTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGT 2411123 32 96.9 33 ...................A............ GCATTACCCTCCCAGTAATCCATCGTAAACACA 2411188 32 96.9 33 ........T....................... TCTGACAAATGTTAATTAAGCAATGCCTCACAT 2411253 32 84.4 0 ....T........C....AT..........G. | ========== ====== ====== ====== ================================ ======================================= ================== 23 32 98.9 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTCAATGTCATCTATCCTGGGGCCATTTCGACCAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGGCAACCGTTGGCAGATGGACCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCAGATCATTCGCGTCACATTACTGGTGCACAAATTGTAATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATGCTCTGGGACGGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTGGCATCGTTTTTTTCGAAAATGCATGGAATTGATATCATTAGGGTATGAATTCCTTCATTTTCGCT # Right flank : TATCTATAGTGTTCGTAACCTTGCATAACAACTCTCAGCAGACTTTACATGATTGGAGCCAATATAATTTGTGTTATGAACTTTAAGATTATTAGTTTAGTTCTCTCTAAAAATACTATTTCCACATGATTTAAAATAATATTTGTTTACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATATAAGTCTCCTTCAATAACCACCTAAAAGTCATAAAATGAATATAGAGCTGTGGATGTGAAACCGTAATCCTTGAATTAAGTAGATAAGAGAGGAAAGGAAGAGAAATTACAACACTAGGACAATTATATTAGCACTATCTATGAATTCACTTAACAACGGGAAATGTCCAAGTGTGGATTCTAGATGCTGTCGCTATTTACCTTAAGGCACGATTATACAGTTTAAGTATTTGCTCATAGGAGGAAAATAGATGAATTTATTATTCATTCCTGGTTTATATTTTTAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2420400-2420845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017968.3 Paenibacillus polymyxa strain YC0573 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2420400 33 100.0 38 ................................. AACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGA 2420471 33 100.0 36 ................................. CGTTGAACTTCACAACTTTGGATAAATTGGAGCAAG 2420540 33 100.0 36 ................................. AACCTACCGCGCATGTGTGCTCCAACTTTGAGAATA 2420609 33 100.0 36 ................................. GTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGC 2420678 33 100.0 35 ................................. TATGGAACTTAAGTTATTCGAAGTTAAAACGACTA 2420746 33 100.0 35 ................................. TCTTGATCTGGTTCGGGGTAGCTTGGGGAGTCATT 2420814 32 93.9 0 ..........A...-.................. | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 99.1 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGTACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TTTCACAAGTACCGCTCCCATCGAAATGAATAGAAGACACGTTGCGGAATTGAATCGCACAAGGGTTCTGACCAGGCTGTTATTGTTTCCGTTGATTGACTGGTTCCTTGCCGTCTGCACGTGCCATAAAGCCCCGGAATAACTCGGGAAGTGCCTCTGGATATTGCTGAATTACAGGAGCTCTGCTGCGATCTGTTTGAGCACTGGCGGTGTTGGGATGAGTTGGCCGTCACCTTTGTTGCCCTTGATGTAGGCTTTATCCTCGTAGGCATAATATACATCGCCTTGGCCCTCAACGACCGGGTAGCCGCTCTCATCATCAGTTAAAGATGTTAGCACGTGATTGCCATGTTGTGCGGCGTGCTCCTCATCATGCAAGCGCAGGATGCCGTCCTTACTTAAAAATGCGAAACGTGGTTGTGTAGTAGACACAATCATGTCCTCCTGAAATGATTTTTTTGAGAAATCAAAAAGGCCGACACATTGGCCGACCTGATTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 2427332-2427767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017968.3 Paenibacillus polymyxa strain YC0573 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2427332 32 100.0 39 ................................ TTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGA 2427403 32 100.0 34 ................................ TGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGAC 2427469 32 100.0 35 ................................ ACAGATGGAAGTTATGTAGTGATCAGAAAGAAGAT 2427536 32 100.0 35 ................................ ACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGA 2427603 32 96.9 34 ......T......................... CTTCAACGACAAAAAAGGCTCATACCGAATAATT 2427669 32 96.9 33 ...................T............ GTTTCTCTGCCATCTCTGCTTTTAAGAGTTTCG 2427734 32 90.6 0 .............................CGG | CA [2427760] ========== ====== ====== ====== ================================ ======================================= ================== 7 32 97.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGATTAATAACTCAACTTTTGCCGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAATATAAAGGTATTTTTCTGATCAATGTAGTCGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGTGTTAACTGGTGGGACCCTGCTTTTAAAAGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTACTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATATGAACAAGTTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGGTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : GAGCAGCCGCCACTTGGTCGTACGAGTGGAGAGCGCCTCTTTATCCGAAATCATGAAGGGGTCCGTGAAGTGAGGAGCTGGAGATTTTACGTGGTTTGGAGGGAGACGGCGTTGGTTCAGTACAATTCCGTGTGGGATGATCTGATCTTACAGCAAAAAGATGATTTTTATTTCCATGGACGCCATAAGCGCCCGTCGTTAGATAACGTGAATGCCCTATTATCTTTTGCCTATACACTGTTGTCCAACGATATGAAATCCGCACTGGAAGCTGTCGGTCTGGATGCTTATGTAGGTTTTCTGCATAGAGATCGTCCAGGGCGAGCCTAATTGGCACTGGATGTGATGAAAGAGCTTAGAGGAGTAAATACCGACCGTTTTGTTCTTACATTATTAACAAAAAATGATTCATGGCAAAGGATTTTACAAAAAAGAAAACGAGGCTGTCATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAAGAACGGA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2428879-2429111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017968.3 Paenibacillus polymyxa strain YC0573 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2428879 32 100.0 36 ................................ GTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAA 2428947 32 100.0 34 ................................ CTGACAGATGGAGGTTATATTTCACCGGGTCTAT 2429013 32 100.0 35 ................................ TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC 2429080 32 87.5 0 ..........................G.T.TG | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTTGATCTTGTTAATACTAATTACGTATGATGTAAGTACATTAGATAGAGAAGGCAGAAAAAGACTGGAAAAGGTTGTGAAAAGGTGCGTAGATCACGGACAAAGGGTGTAAAATTCCGTGTTTGAGTGCATTTTGGATTCGACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAACTTTGGAGATAGCTATAAAAAGAAAGTAGAGCATATAGGGGCTAAGGAAGCTTACGATATGGAAAGCCCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAAATTTGCTATTTATCCGTAGAGTCAATAGTTGATCCAAGCTTATTTGACATCAGTTTTTGCGACAATGTGTAGAATTGATATCATTAGGGTATCAATTACTGCATTTTCGCT # Right flank : GAAAAAGAAGGCTTGTTTCGTGGCCTGCCCAGCAGTGAATAGGTGCAAATTTCTTCTTAACGGATTTCTTATTCGACAAATTCCCCCTTACTTTTATGCAACAATTAACTAACATTTACAATGGTTGAAGTATAAATTAAGGTGGGAGTTGCTGCTTATGAGAATTTCCATGAGTAAGTTTTTAAAGCGCTATGCAGCTATTTTGTTGGGCTACGCAATATGTATAGGGTTATTTTACGCTTTGGGATATAAGATGAGCGCAATGGGAATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGTAATATCAAAGCGAGAGAAATGAACCTAGGTATCCCCTGATTGCATCAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCAACAGAGTTTCTGCATGGGACCTCTATATCATTACTGGTGAGAATCCACATGGGGAAATGAATTAGTCATGTCAACTCTGTGAAACCTTTTACTTGGATCA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //