Array 1 536191-537683 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXE01000002.1 Salmonella enterica isolate STY40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 536191 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 536252 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 536313 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 536374 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 536435 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 536496 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 536557 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 536618 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 536679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 536740 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 536801 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 536862 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 536923 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 536984 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 537045 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 537106 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 537168 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 537229 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 537290 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 537351 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 537412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 537473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 537534 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 537595 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 537656 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 553815-554741 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXE01000002.1 Salmonella enterica isolate STY40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 553815 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 553876 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 553937 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 553998 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 554060 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 554163 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 554224 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 554285 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 554346 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 554407 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 554468 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 554529 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 554590 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 554651 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 554712 29 96.6 0 A............................ | A [554738] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //