Array 1 21604-20777 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEUXH010000010.1 Streptococcus suis strain HN147 Scaffold10, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     21603	    36	 100.0	    30	....................................	AATTTTTGGCTGATGATGTTGCTTGAGAAA	
     21537	    36	 100.0	    30	....................................	TAGAAATGGAAAATTCGCAAAAGAAATATA	
     21471	    36	 100.0	    30	....................................	AAAAGCTTATTCAGCATATCGTGTCAAAGG	
     21405	    36	 100.0	    30	....................................	CTATGGTTTTCTTTTCGTCTATCATCGTAT	
     21339	    36	 100.0	    29	....................................	ATATTCAATTTACTAAATTCAAAAATCCA 	
     21274	    36	 100.0	    30	....................................	AATTATTGTGTATCATTCAAATCAAGCACA	
     21208	    36	 100.0	    30	....................................	GAATTGCTAAAGAACAGCTAGACGTGCTAT	
     21142	    36	 100.0	    30	....................................	TACTTTTTGGGGACATCAGCAAAACACATA	
     21076	    36	 100.0	    30	....................................	TCTTTTAATTGTTTCAAACAGTCACCCCCT	
     21010	    36	 100.0	    30	....................................	CGAAAACGTCGTTCCACATCCAGCTGTCTA	
     20944	    36	 100.0	    30	....................................	AATAAAGCGAAACAAAAAACGAAGATAAAA	
     20878	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
     20812	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [20788]
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.7	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG
# Right flank :  TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.18   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//