Array 1 304598-305405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEFW010000005.1 Pseudomonas chlororaphis subsp. aurantiaca strain SMMP3 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 304598 28 100.0 32 ............................ GGGCGATCATGAACAGGCGTTCACGGCTAGTC 304658 28 100.0 32 ............................ TGGAGAGAGAACAGGCTTGTTCAGCGCCCGAC 304718 28 100.0 32 ............................ GTCCACTCGTCATTCGTCAGTCGAGCCATGAG 304778 28 100.0 32 ............................ ATCGCGACGAGATCATTGCCGGCTGACTTTGT 304838 28 100.0 33 ............................ TGACGCCGGGCCTGGCCCGGGAGTGGCTTGACC 304899 28 100.0 32 ............................ AAGAAACCCGACGCCGACAACGTGCTCAAGGC 304959 28 100.0 32 ............................ GAGAAAGAGCGTGACGAAGCGCGGGCCAGACT 305019 28 100.0 31 ............................ GTACCAAAAGGCCGGGAAAGACGGGCAGAAA 305078 28 100.0 32 ............................ AGTTCGCCAAGCACACGCTCAAGGCGCGCCAC 305138 28 100.0 32 ............................ CTCGGTAGATGTTCTGGCCAATGAACAGCAGT 305198 28 100.0 32 ............................ CTGAGCATTGCCCGGCGAGTCATAGCCGGTCG 305258 28 100.0 32 ............................ AAGAACCGTCACGCCTACGCCGATCAACTGCC 305318 28 100.0 32 ............................ TGTCCGCAGCCTTCCAATTCGATAATTCATTT 305378 28 67.9 0 T..........C.........CCGTTCC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCCCTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCATGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCGGTGCAATACCGACATGTCAGCCGCGTGCAGATTGACAGCAACCCCGAACGCACTCGTCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCTCGTCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCTCGAAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CCTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCTCCCAACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGCCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCCAGCGCTACATCGATTTCGTCGGCGGTATTGGCGTGCTCAACCTGGGGCATTGCCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCACGGACCCTATGTCGAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGTGCGGAAGCGGCGGAGAACGCCTTGAAGATCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25412-24543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEFW010000011.1 Pseudomonas chlororaphis subsp. aurantiaca strain SMMP3 scaffold11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25411 28 96.4 32 ...........G................ TGCCAGTTCCAGGTGATCGCGTAGCCCTTGGC 25351 28 100.0 32 ............................ TTTCTCGAAAGTGGTCTGGCAAGGCACGCACC 25291 28 100.0 32 ............................ TTCGCGGTGTGCAGCTGTCGGACCTGCTGGCG 25231 28 100.0 32 ............................ AGTGGGGGAACTTGGCCGCATGAGCTATGGCA 25171 28 100.0 32 ............................ TGGGCGATCATCTGCACTCGCTTCGGTCGAAT 25111 28 100.0 33 ............................ TCGCAAGCCAGCTCACGCCACAGCCCCCGACAA 25050 28 100.0 32 ............................ ATATCCGCTACCGCCTGACCGTTATCCAGCAA 24990 28 100.0 32 ............................ TTCAGGAATCGCTCCTTGTTCGGGCCGTAGAT 24930 28 100.0 32 ............................ AACAGGACTAAGCCCCGAAATCCAAGGGGATC 24870 28 100.0 32 ............................ CTCAGGAACGAGGCCGGCCACTCGACGAATCT 24810 28 100.0 32 ............................ TGAGATTCCACAGGTTCCGCATTGTGCGGGGA 24750 28 100.0 32 ............................ CGACTCTGCCCGCCTACCTCGACGAGCCTTCG 24690 28 100.0 32 ............................ TCAGATCCCCCGGACGATACGGATGACATCAC 24630 28 96.4 32 ......................C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 24570 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.4 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AAGGCTCGTTGCTCGCTGCCTTGAAACCCACCGCCGCAGGTCCTGCGGGTAACGATTCGCTCTTCACCGTCCGCCCCGGCATCAGCGCCGAAGAAGCGTTGCTTCACGTTTCCATGCTGCTCAAGTCCGCCGAGGAGGTCTCCGACGAAATCACCGAACACGCCAGCGGTATCGAGCGTGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGACGGTAATCGTCTCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCCGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : TTAATCCATAGCATCAGTCCGCGTTGGGAAATAACACCGCGACCCAGTTCCCAACCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGCAGGGCTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCGGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTCGGCGATCGGGCGATGGTCTGGAGCCGTACCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAACCCGCGCAAGTTTGTCTCCCCCCTGGCCGATGCCCGCACCGACTTCACCGCGCGGGTCGAGTTGGGCGGGTTGCCCACCGACCAGGCGATTTTTTATCGGGTGTATTTCGAGGACGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //