Array 1 131600-129652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSHM010000004.1 Acinetobacter baumannii strain INTEC_AI11 1a_H5TVJDSXY_L1-1a_H5TVJDSXY_L1_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 131599 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 131539 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 131479 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 131419 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 131359 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 131299 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 131239 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 131179 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 131119 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 131059 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 130999 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 130940 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 130880 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 130820 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 130760 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 130700 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 130640 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 130580 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 130520 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 130460 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 130400 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 130340 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 130280 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 130221 29 82.8 31 CG..G........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA C [130216] 130160 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 130100 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 130040 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 129980 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 129920 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 129860 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 129800 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 129740 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 129681 29 82.8 0 .G..G...................AT..T | C [129676] ========== ====== ====== ====== ============================= =============================== ================== 33 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCTACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCTTT # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 136690-138038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSHM010000004.1 Acinetobacter baumannii strain INTEC_AI11 1a_H5TVJDSXY_L1-1a_H5TVJDSXY_L1_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136690 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 136750 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 136810 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 136870 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 136930 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 136990 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 137050 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 137110 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 137170 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 137231 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 137291 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 137351 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 137411 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 137471 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 137531 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 137591 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 137651 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 137711 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 137771 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 137831 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 137891 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 137951 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 138012 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //