Array 1 84368-85903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRYK01000086.1 Escherichia coli strain A20 NODE_16_length_105676_cov_90.1499, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84368 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84429 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84490 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84551 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84612 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84673 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84734 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84795 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84856 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84917 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84978 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 85039 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [85063] Deletion [85080] 85081 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 85142 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85203 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85264 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85325 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85386 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85447 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85508 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85569 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85630 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85691 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85753 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85814 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85875 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1707-2955 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRYK01000147.1 Escherichia coli strain A20 NODE_18_length_94094_cov_94.9975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1707 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 1768 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 1829 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 1890 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1951 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2012 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 2073 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 2134 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 2195 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 2256 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 2317 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 2378 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 2439 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 2500 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 2561 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 2622 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 2683 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 2744 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 2805 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2866 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2927 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //