Array 1 266-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000140.1 Neisseria sicca DS1 contig00140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 265 33 97.0 32 G................................ GTCCGCACCGGCAGCAGCCTGCACGCAAACCA 200 33 100.0 34 ................................. GGTTCTGTCTATGCGCTAAATCAGGGTAGCGAAA 133 33 100.0 34 ................................. GTTGGCGCGCTGGGATTTCGGCGGATATGCGGGT 66 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GGCTGGTGTGTTGAAAACATCTGCACGATAGAAACAAGCTATCGGAGCTTG # Right flank : CCTCCTCAATCATAGTTGCTTGCCAGAGTCTGGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000432.1 Neisseria sicca DS1 contig00432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 45 33 100.0 34 ................................. GCCTGTCTCAAAACCTGTTCCTAAAAATGGTCCG 112 33 100.0 36 ................................. TTTTTAAATCCCATTATCTTTTAATTTAATCCTAAT 181 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 36 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Left flank : TGTTGAAACGCTTTTGTCGGGTTTTGGGTCTGCTGAAAAAGATGC # Right flank : ACCCGCCCGCCATCGGCATGACCTACACGCCCGTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-144 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000414.1 Neisseria sicca DS1 contig00414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 12 37.5 35 --------------------............ CATGATTTCCTTTTCATGCTTTGCCTGTTTTAAAT 48 32 100.0 33 ................................ CTTTAAACGTGATGCCACGATACCCACGACGCC 113 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 79.2 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : TGGCAGGGGTGTTATTCTTTTGCTCTGCCAATGTCCCAGCCGCCTTCAGGCGGCTG # Questionable array : NO Score: 4.32 # Score Detail : 1:0, 2:3, 3:0, 4:-0.04, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 37-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000417.1 Neisseria sicca DS1 contig00417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 37 33 100.0 35 ................................. AGTTAGGCATCGAAACCGTTATGAGAATGCCTAGA 105 33 97.0 32 G................................ GTTATTGGTATTTTTTAAGAACAGGACAAGGT 170 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 99.0 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGATGTCGGCAGACAAAAGCACGGTCATGGTTGCGTC # Right flank : TTACATGAATAGATTGTATTTCATTACAAATAGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000403.1 Neisseria sicca DS1 contig00403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38 33 90.9 32 A............A........T.......... CATCATCCCCCGGGTGTCATCATCCTTGACCG 103 33 93.9 34 .............A........T.......... TTCTTCGATTTCGCGCTGCAAATCGCGACACCAA 170 33 100.0 36 ................................. TCGTGCAGTTGAGTTAGTGGGTTTGATACCGGCGGG 239 33 97.0 32 G................................ GGCAAGACGACGGCGACGGTGGCGGTGGCGAA 304 33 97.0 35 T................................ AGGTTTACAACGACTATATCTTCATGGCGCGGCGG 372 33 87.9 0 AA...........A....A.............. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 94.5 34 CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : AAAAACATCTACCGCGTGGACGGTCAGGACGTTTTGAA # Right flank : CCCGTAGCCGAGGGAGCAGATGTAGAGGTGCAGGCCCAGCCATCTTCAGTTAACCATATGTCGACCAGATGGTGCTTTCCTGATTTAACCCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATGAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGATGATAAGATTACAGGTTTGGTTAATAAT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6149-6379 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000401.1 Neisseria sicca DS1 contig00401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 6149 24 100.0 44 ........................ GGGGATTAAGACCTCGAAATATTTTTGAGCTATCTCCCCTTGAA 6217 24 100.0 45 ........................ GGGGATTAAGACGATAACTAGGTAAATATAGACGTATTGCATTTT 6286 24 100.0 46 ........................ NNNNNATTAAGACTTTCATTCCTGAATCTCCTTAACAAGTGAACAA 6356 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 4 24 100.0 45 GTCGGAAGACTTGCCCCACTAATC # Left flank : AAACAAGGCACATGGCAGTTCCCCGAACCCAGCCGCTTCATAGACGAAATGCCGCAGGAAGACATCAAGATTTTAGGGCGCAAAGGCGGAGAACCGATTGTGAGCAAGGAAGAGGGCAGAAGCCATCTGGCGGGAATGTTGGATATGTTGGCGGCAAAAGGGAAAGGCTGAAACGAGAGATGGACAAGCAAAAGGTCGTCTGAAATAGGTTGCACATGGTACTCTTCTTTAATTTGTAGTGCTCCGGATTCCTCCTGTCAGCCTGAAAGGACAACAAATCTGTGTCAGCCTCAATAATTCAAAAGCAGCGTTGTCGAATGTAAAATACATGGCTATAATCCGCCTTACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGATTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACTGTATAGAAGATTGAAAATAATGGAATTTTTTAACCGAGTGCA # Right flank : CGGGGATAAAAATCAAACGGCCTCGATGGTTCATCCCATCAAGGCCGTTTTTACGTCATGTGTATTTTCAAGGTTTTTTCGATATTGAATTAAGCGCAAAACAAGACAGATTCGAGTGCGTCAAATCAAGCTGCTAGCGCATCAAATGCTCAACAAATACCCAACAAGTCCAGATTTCCACCCTCTCCTTTTACGCTCCAAATCCATCATATCAAATCAATCCCGCTTACCGGATTGGAGGCATTTTCATATACGGTAATCAAACACCTTCCCACTTTCATCAAACACAATTTCCAAATAAGGTTTATCGACATAAAGAGGTCGTCTGAAAATCTGCCATTTCATTTTTCAGACGACCTCTTGTTAGTACAACTCAAAAACCTCGTTGTTGCCAACAAGGTGCTCAACCCATCTTCCCCGACGCGGTAAAACGCCAAGCTGCCCAAAAGGTTGGGGAAATGTTTGACCTGTTTGTTGCCCGCCATGACGGCGCGCTCGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 23169-23533 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPG01000380.1 Neisseria sicca DS1 contig00380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 23169 33 97.0 33 T................................ TTCGGTGCTTGCACCGCTACGCAGGGCAGTTGC 23235 33 97.0 34 A................................ AATGACGGCAATACCATCCTCTTTACGGTTTTTT 23302 33 100.0 34 ................................. CAGTTCGTTTTTGCACTTGCGCTGTTCTTCAACA 23369 33 100.0 32 ................................. GGCATAATCCACGAAAATGGAACGGCCATTTT 23434 33 97.0 34 C................................ TTTGCTGTCAGATTTGATTTTGTAGCGGTAGCCC 23501 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 6 33 98.0 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGATGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAACTGTGTCTGGATTACGGCGTTCGTGTGCAGTATTCAGTGTTCGAATGCGACATCGTGCCCGATCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTAGAACATCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGTGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGGGCAAGGCTTTTGAGAGAGGC # Right flank : CTCCG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //