Array 1 996115-989316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEP010000005.1 Bifidobacterium pseudocatenulatum strain YIT12749 YIT12749_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 996114 33 100.0 34 ................................. TATAATCCTCAGACGCTCGGCAACACCATGTATT 996047 33 100.0 35 ................................. ATGGTGGACCACACGATACGTCACCAGGACCGAAG 995979 33 100.0 36 ................................. AGGTCGGCCAACTGCATGGTCTGTTGGTTGGACAGG 995910 33 100.0 34 ................................. AGCTATGCGAAATGGACGCCAAACACGAAATTCA 995843 33 100.0 34 ................................. ACGTTTACGACGTTGCCAAGTCGCATCATGTTTG 995776 33 100.0 34 ................................. CGTACCGTTGATTATCGCCACGTCCGAAACCAAC 995709 33 100.0 34 ................................. CGGTATTTCCTGTGATACCGCGCCGCCTTGTGGG 995642 33 100.0 35 ................................. TGCAGATGACGAACGTCCTGAGTGACGAAGCGTTC 995574 33 100.0 37 ................................. ATCCCTGAATTTGTTACGTATGGCATAGTCGGCATAG 995504 33 100.0 35 ................................. AGATTATGACCGTCCAATACGCCCATAAGCGGCTT 995436 33 100.0 34 ................................. TCCGGCAAGGCCGCAGCACGACTGAAGGGAGTCG 995369 33 100.0 33 ................................. TCCGCTTGATGCTTATGGCGCGGCTCAGGCTTG 995303 33 100.0 34 ................................. GGCAACGATCCCGCACGCCGGCAGGCGCTCGGTG 995236 33 100.0 34 ................................. GAACCCCGTTTTGACGGATACGATGGACAGTTTC 995169 33 100.0 37 ................................. CAAGGCATTGCCGCGAATGACGGCCCACTTGTCGGAG 995099 33 100.0 35 ................................. GTGTGGACGGTTTGCCTCATGTTGAGTTGATCGCT 995031 33 100.0 34 ................................. TGCCAACTCCTCCGAGGAGAAGACGGAAGCCGAA 994964 33 100.0 35 ................................. ACGGTCGGTCAGAATGTCGGCCTCATCACTTCCGA 994896 33 100.0 36 ................................. ACTCCTGCCGGCAGACCATCCCACATGCGTCCGAAA 994827 33 100.0 35 ................................. GCGAAACGTTTTCGGCCCGCGCCTTTCGCGCGGAA 994759 33 100.0 36 ................................. GGACAGCCGGAGCCCGAGGAGCCGAGCTTCTGATGC 994690 33 100.0 36 ................................. ATGTCGGCCATCATTGATCCTTTCTGTGGTGGTTGT 994621 33 100.0 36 ................................. AGCCAACAGGTGCTGAAGAACGAGACCCTGCGGGAC 994552 33 100.0 35 ................................. ACGTACTGGAAATTGCACGAGTTGTATGTGCGTAG 994484 33 100.0 36 ................................. GCGAACTCGTCCAGGAAACAGTGCAGGGGAGTGGCG 994415 33 100.0 35 ................................. CGATCCGGTAGACGCCGGACTGTTGTGTGACGGTG 994347 33 100.0 36 ................................. GTGGACTTGCAAGGACTGTGCTTATGCCGACACGTA 994278 33 100.0 36 ................................. AAGCACCCACTGAGCGTCAGCGCTGTTGCGGCGGCA 994209 33 100.0 35 ................................. ACATGAGTCCACCGGCTCCCAGCCGGATAGGATGC 994141 33 100.0 32 ................................. TCGATCCACCATGCCGCCGACGTTTTGTTGGC 994076 33 100.0 35 ................................. TCGTGGGGCGAACCGCACGGTCAGCCATAGGACGG 994008 33 100.0 34 ................................. TTGTACACCGTGTTTTTCGCTGCTGGCCGCATGC 993941 33 100.0 35 ................................. GGAAGTGAAGGCACGCTGAAGCGTCTTGTCATCCG 993873 33 100.0 35 ................................. TCCACGGTCGCGCCCAGCACGAACTGTCCGGGCTG 993805 33 100.0 36 ................................. GCCTCAGTCTTCCGAGACAACAGTGAGGGTTATCAG 993736 33 100.0 33 ................................. GTTGCGGACTTGACGAAACCGCCGAATCCCTGA 993670 33 100.0 34 ................................. GTGAAACTCGACGTCCGCAAATGCTACCCGTCGA 993603 33 100.0 36 ................................. ACCATCGCAAACACCGCGCGCGTCTATAACAAGCAG 993534 33 100.0 34 ................................. GTCAATGAACGAGCGGAAAAACCCCTTGCTTTGC 993467 33 100.0 37 ................................. ACGCCACCGAAACGGTGTCCGAGTACGGACCTGTGGT 993397 33 100.0 36 ................................. GCGGAATACGCGCGCAAGGGCGGTTTTTATCGAGTG 993328 33 100.0 33 ................................. GTTATAGGGGTGCGTTGGGCAAACATAATGTCT 993262 33 100.0 33 ................................. GTTTATGAAAGTGACACCGTCTCAATCCGTACT 993196 33 100.0 35 ................................. GACATAGGCGTTACCCAGCCGAATATCATGTTGAA 993128 33 100.0 35 ................................. TCGCACCTATTTTACCTGTTGTCGCCTAATGTCAG 993060 33 100.0 35 ................................. AAAAGGCGAACCCCTATTTTGCAAAATACCGACTT 992992 33 100.0 36 ................................. TGCTGGGATGAAATGCTCGAAACTACCAACTCTCCT 992923 33 100.0 34 ................................. ACGGCCCCGACCGGAGTGGCCTGGACCCCGCCGG 992856 33 100.0 35 ................................. CCGAAGATTCGTTCGTGCTGGTCGAGTCCATCTCC 992788 33 100.0 33 ................................. TTCGCCGGTGGTCGAGCCAATCAGACCCTGATC 992722 33 100.0 33 ................................. TAACACACTGTACCTTAATCACTGGGGCATCTA 992656 33 100.0 37 ................................. CACGATAGCTTCGTCGCCATCGACGGAGAAATCGAGG 992586 33 100.0 33 ................................. GCCACGCAAGACACGAAAACAAACCAACGCAAA 992520 33 100.0 33 ................................. AAATCAAGCGAACCGGCATAACCGTCGATATGG 992454 33 100.0 35 ................................. ACCAAACTGCTTGACATGAACATGGTCAGCACGGG 992386 33 100.0 35 ................................. AACGCCTGCCATGTGACTGTCGCTGATGGTGGGAC 992318 33 100.0 34 ................................. GTGTTTGGTGCTGGTCGACGGTCTGATGCAGGAG 992251 33 100.0 35 ................................. GCATGTCTCGCAGAGGATTGCGTCGCAGCCGTAGG 992183 33 100.0 32 ................................. GTAGCACACCTCAGATAGATGCGCAGCGGCCG 992118 33 100.0 35 ................................. TACATCCGCACCAATGACGGGGAAATGCGTCGCGT 992050 33 100.0 36 ................................. CGGCAACCCTCTCAATCATCGACGATGACATGGTGG 991981 33 100.0 34 ................................. TGGATTGACACGTTGGAGCGTGCAATCCGCACCG 991914 33 100.0 36 ................................. TATCTCGAAATGGGCGGATTGCGCGCCATGGGCGAG 991845 33 100.0 36 ................................. TTCGGCGAGCGTGACGCATGGCAGAAGATCGCCGCA 991776 33 100.0 34 ................................. GACTCGGATCTGGATGATGTGGCGCGAACCATCG 991709 33 100.0 36 ................................. CGTAAGGCGATTCCCCACCAGTCTGCCACGCGATTG 991640 33 100.0 34 ................................. AAAAAGGCTGCGCCAGTAGCAGTGTCGGTTACGC 991573 33 100.0 33 ................................. CACGTCACTTGCTTACAATCTCGGCCACTAGAG 991507 33 100.0 34 ................................. ATGCCAGCGCCATTCCAAAACGCCACGTCACCAT 991440 33 100.0 35 ................................. GAACTGCTCGCTGAAACCGGCCACCAACTGCTTGG 991372 33 100.0 34 ................................. AACCTAGCGAACGGCCTGATCGGTGTTATGGTAA 991305 33 100.0 34 ................................. CAGAGGTGGGCGAGGTAAACGCTTTTGGGTCCAG 991238 33 100.0 34 ................................. GTGCTGGCCTTGGCCGTCACGTCGAGGCTTTCGT 991171 33 100.0 36 ................................. CTCGGACGTGACGCGGAAAGCCCCGGACACGGGTCG 991102 33 100.0 36 ................................. TGCCCGTCGCCCTGCCAGCATGCCTTCGAATCGTCG 991033 33 100.0 37 ................................. GGCTTGGAAGTCGAGATGGAATCCGAGCTTGACACCG 990963 33 100.0 35 ................................. ATGTCGGCAAGCTGCATGGTCTGCTGGTTGCTGAG 990895 33 100.0 34 ................................. CGTATCGCATCATTCCGATTCCCGAAGACATGTT 990828 33 100.0 34 ................................. TCGACCTGGACAGTGCCGTAACTGTTGCCCTTAT 990761 33 100.0 33 ................................. CAATCGGATTACCCACTATGCAACCATTTGCAG 990695 33 100.0 35 ................................. AAGTTCGTGACCTACGACAGCACGGATTACACCGA 990627 33 100.0 34 ................................. ACGGTAACGGCCAAAAAGTTTTGCATCTCACATA 990560 33 100.0 36 ................................. AACCTAAATTAGGATCTACTAAGAAGGGTATCGAGA 990491 33 100.0 36 ................................. TTAAACCGATGCGTGATAACAAAGGATCAGATGGAT 990422 33 100.0 35 ................................. TGATTGTCCCGCCATGCCTGACATGCGCGGCGCGT 990354 32 97.0 33 .....................-........... GTCGGTGCGGATGGTGTTTGGCTTGAGGATCGG 990289 33 100.0 34 ................................. ACGATCAAGATCACCGACGACGGCCACGTGACCA 990222 33 100.0 35 ................................. AGTTCCATGTCCTGCGTCCGGTCGAGTAGGTCCTG 990154 33 100.0 36 ................................. TGCGCTGCAGTCAGACTGCGGAACTGCTTGAGTCGT 990085 33 100.0 33 ................................. TTGATCAGGCGCACGTTGCCGGCGGTATTGCCG 990019 33 100.0 36 ................................. TGATTGTCCAGCCATGCCTGGCATGCCCGATGCGTG 989950 33 100.0 34 ................................. TGCAAATGACGAACGTGCTGAGTGACGAAGCCTT 989883 33 100.0 33 ................................. CTTGCGGTGCTGTTCCACGTCAGTCCGGCGAAG 989817 33 100.0 34 ................................. AGGAAATGATTGAGTGCAGTGCCGAGCGCATTGG 989750 33 100.0 33 ................................. CGTACTCCAGCTGGGTTTTGCAATGCTACTGCC 989684 33 100.0 35 ................................. ATCGAGCACGCCGAGCGCGTTGCTGCCGACGTTAC 989616 33 100.0 36 ................................. CACGGGGTATCGGCCTTATACTGTATGACGCGTTTT 989547 33 100.0 34 ................................. CGCGCGTTGGGCCAAACCCGACGAGATGGCACCG 989480 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 989413 33 100.0 32 ................................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 989348 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 101 33 100.0 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //