Array 1 44295-46162 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHT01000011.1 Bacteroides fragilis strain AD135F_3B NODE_11_length_193641_cov_65.929426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 44295 35 100.0 35 ................................... AAGCTTTATCGGCAGCATTTCTGCTGTTGCATGTT 44365 35 100.0 33 ................................... CCCGCAGGGGTTCGGCATCGGCTGCCAGTTCAG 44433 35 100.0 37 ................................... ACAACTGTCTACCTTCTTCATGAGACTGTGCTGAAAA 44505 35 100.0 35 ................................... GTCTTTGGAATTGTTCGCCAATCCAATCCTTCACT 44575 35 100.0 37 ................................... ACAACTGTCTACCTTCTTCATGAGACTGTGCTGAAAA 44647 35 100.0 35 ................................... GTCTTTGGAATTGTTCGCCAATCCAATCCTTCACT 44717 35 100.0 36 ................................... AAATAATCCTATTAACGCTACTGATATTAATCCTAA 44788 35 100.0 38 ................................... GGTACCATTGACGGTTACAGAAGTTCTTGCTTCTTTTT 44861 35 100.0 34 ................................... ACATATAAGACAGCGGCAACAATTGCGCAACAAA 44930 35 100.0 34 ................................... ACAAAAGGTGCTTTAGGGGCTGCAGAATAATTAT 44999 35 100.0 33 ................................... TTAATAGCCTTTTCTATACCTCTCAGTAATGTA 45067 35 100.0 35 ................................... GTCTTTCATTGTCTCTCCGTGAGACTGCATATAGA 45137 35 100.0 36 ................................... ACGGAACCGATACCTTGTTGAGGTACGACTTTGGGT 45208 35 100.0 35 ................................... AAAATCGTTACATAAGTCCCGCTTTCTTTGACCGA 45278 35 100.0 36 ................................... ATGTCACGGTTTTCCGCAAACTTTGAAAATTTTTCA 45349 35 100.0 40 ................................... TCTACTGCTTTGGTTCCGGTCTGCTGGTGGCCTGAAAAGA 45424 35 100.0 37 ................................... AATATTTCTGTACGTTCCATAAATATAAAGAATTAAT 45496 35 100.0 37 ................................... AAGCACCGGCCAAAACCGTCAAATCACCGTATTCAAA 45568 35 100.0 34 ................................... TTTAATGTCGATTTCAAAATTGACGGTTATTTTT 45637 35 97.1 35 ..........................A........ GCCAACCCATAACTAAGATAAGCAGCTTAGGAAGC 45707 35 100.0 34 ................................... ATGATTTCTCAACTGGTAATGCCTTTCAGTAACC 45776 35 100.0 34 ................................... ACAAAACATATTCCCGGCCTTGAAGACAATAATT 45845 35 97.1 36 ................A.................. GGCTTACATTGCTGTAAACCTTCAAATCCAATGTCT 45916 35 100.0 39 ................................... ATTCATAGGTATCAAATTTTTAAGTTAATACTAAATTCT 45990 35 100.0 34 ................................... ACATAAGCAGCATCAATTTCGCTACGACACATAA 46059 35 100.0 34 ................................... ATCGAGCCGCCTCGGTCAATCTTCGGAGTCTTAA 46128 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 27 35 99.8 36 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATGCACTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CCAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTAAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAATTACATTGTAGATGCTTTGGATATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 1122-2699 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHT01000006.1 Bacteroides fragilis strain AD135F_3B NODE_6_length_405264_cov_81.898338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1122 47 95.7 29 ...A......A.................................... CGTTCAGCACATCTACCCATAGCTTCTCA 1198 47 100.0 30 ............................................... CGTCCGGCAAACCTACAAATTAAAAATCAC 1275 47 100.0 30 ............................................... AGATGATAGTTTCCCGGTTGCCTTCCCGTC 1352 47 100.0 30 ............................................... GTAGAGTCCTACCGTAAATTTGGCGTATAC 1429 47 100.0 30 ............................................... ATTGTATAAAAAAGCCCGCCCCATTCACTC 1506 47 100.0 29 ............................................... TGGATAGGGAATTAAGTGAAGCAGGAGGG 1582 47 100.0 29 ............................................... TTGTACTTGGCGGCTGTTGACTGCCAGTT 1658 47 100.0 29 ............................................... GATGTGCCTTTTTCTGCAAAAGTCGTGCA 1734 47 100.0 30 ............................................... ACAAAACTGGCATATTACCATTAACAAGAG 1811 47 100.0 29 ............................................... CGTACTTACCGTTTTCCGTCTCAAAATGG 1887 47 100.0 30 ............................................... CCAAAGATCTTTATTCCAATTGGCATAACG 1964 47 100.0 30 ............................................... CGTGGTAAATACACATGATTATACCATGCT 2041 47 100.0 29 ............................................... AGGAACAAAAAACCATTCGTAATACTCAC 2117 47 100.0 29 ............................................... TTCAATAAATCGGGTAAATACAAGAATAG 2193 47 100.0 30 ............................................... ACTCCTTGTCCGTCTTTATCTCGACCGAAT 2270 47 100.0 30 ............................................... TTTTATTTTGTTTAGCTCGTATTGTGCGGA 2347 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAGCG 2424 47 100.0 30 ............................................... CCGCTACTGGTAAAGTTGGTGGTTCAGCCA 2501 47 100.0 29 ............................................... TCTGGACTCGTTTCTCCATAACCAAGATA 2577 47 100.0 29 ............................................... TCTTAATATGGTAAAAACCATTTTCAACT 2653 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //