Array 1 469182-471039 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLE01000001.1 Salmonella enterica strain CFSAN064279 CFSAN064279_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 469182 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 469243 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 469304 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 469365 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 469426 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 469487 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 469548 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 469609 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 469670 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 469731 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 469792 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 469853 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 469914 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 469975 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 470036 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 470097 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 470158 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 470219 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 470280 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 470341 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 470402 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 470463 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 470524 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 470585 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 470646 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 470707 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 470768 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 470829 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 470890 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 470951 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 471012 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487721-489399 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLE01000001.1 Salmonella enterica strain CFSAN064279 CFSAN064279_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 487721 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 487782 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 487843 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 487904 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 487965 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 488026 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 488087 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 488148 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 488209 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 488270 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 488331 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 488392 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 488453 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 488514 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 488575 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 488636 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 488697 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 488759 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 488821 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 488882 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 488943 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 489004 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 489065 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 489126 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 489187 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 489248 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 489309 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 489370 29 100.0 0 ............................. | A [489397] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //