Array 1 162456-160552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYW010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S49 NODE_1_length_634109_cov_292.253413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162455 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162394 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162333 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162272 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162211 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162150 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162089 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162027 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161966 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161905 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161844 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161783 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161722 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161661 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161600 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161539 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161478 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161417 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161356 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161295 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161233 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161130 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161069 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161008 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160947 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160886 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160825 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160764 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160703 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160642 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160581 29 96.6 0 A............................ | A [160554] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180080-178587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYW010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S49 NODE_1_length_634109_cov_292.253413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180079 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180018 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179957 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179896 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179835 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179774 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179713 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179652 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179591 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179530 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179469 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179408 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179347 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179286 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179225 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179164 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179102 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179041 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178980 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178919 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178858 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178797 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178736 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178675 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178614 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //