Array 1 1210905-1209916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYA01000001.1 Pseudomonas aeruginosa strain AUS026 IPC334_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1210904 28 100.0 32 ............................ AGGAAGAACAGCAGCAAGCGGCGGCGGAAGAA 1210844 28 100.0 32 ............................ TGATGAGCGCACCGCTAGGCAGGCCATCCAGG 1210784 28 100.0 32 ............................ TATCGGTTCGCCGCTGAGCGGTACGGGTCGCT 1210724 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 1210664 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 1210604 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 1210544 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 1210484 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 1210424 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 1210364 28 100.0 32 ............................ ATGCAACGCCATCTCCTCGGCCAGGTCGATCT 1210304 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 1210244 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 1210184 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1210124 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1210063 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1210003 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1209943 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20267-21135 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYA01000013.1 Pseudomonas aeruginosa strain AUS026 IPC334_13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20267 28 100.0 32 ............................ GTACCGAGTCGCAAACCGTTCGCCGGGCCTTC 20327 28 100.0 33 ............................ CTGAAGAACACGCTGGCCGGTGAGTTCTCCGGG 20388 28 100.0 32 ............................ TTGAAATGGTGCTTGCCCTGCGTACTCCGGTA 20448 28 100.0 32 ............................ CGCTTCGCCTCTTCAAGCTGACGCATGAACTC 20508 28 100.0 32 ............................ TGCCGGGGCTTCCGAGGGGCTGCTAGCAGAAA 20568 28 100.0 32 ............................ ATTCGACGACGTGCCATAGACCGCTTGCATCG 20628 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 20688 28 100.0 32 ............................ GCTTCACGCCCGTCATCGTGCGGCAGGCTCGC 20748 28 100.0 32 ............................ ATCTCCTTCTGCCGGTTGTGATCTTTATTTCA 20808 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCCTCGAAGATTTT 20868 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 20928 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 20988 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 21048 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 21108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31249-29659 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYA01000013.1 Pseudomonas aeruginosa strain AUS026 IPC334_13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31248 28 100.0 33 ............................ CTGGACCTGGTCATGCGTCGAGTCGTCCAGGAA 31187 28 100.0 32 ............................ TTGGACTGCACGTATTCCAGCCGGCTGCCGGA 31127 28 100.0 32 ............................ AGACGTCCGCGTACTGGGGCGCGAAAGAATCC 31067 28 100.0 32 ............................ AAACGGGTTGTTCTTCACGAACGCGCAACTAT 31007 28 100.0 32 ............................ CTAGGGCAATCTGTATATTCAGCGGTTTCCTA 30947 28 96.4 32 .C.......................... TAGCAGTGTCGAAGGCATCGGCCCGGCTGCTG 30887 28 100.0 32 ............................ GACCGGCGCGCTGTCGAGCCCATCGCCGGCGA 30827 28 100.0 32 ............................ GCGAATGGAACGCCCCCACCCTGGACGAGCAG 30767 28 100.0 32 ............................ TCGCGGAACAGCGGTTCGGCTTCCAGCGGCGT 30707 28 100.0 32 ............................ AGCCATTCGATGTGACCCGTAACTCGCTGGTC 30647 28 96.4 32 ..C......................... TCAGGCGAGTCGATGCCGGCATCGAGCAGTTC 30587 28 100.0 32 ............................ CACTCCAAGCGTGATCATGGCGGCGTTTCGCA 30527 28 96.4 32 ...............A............ GATCCGCGTGTCTCGGTGCTGCTGTTCAACAC 30467 28 100.0 32 ............................ TCGAGGTCGGCCAGGTTCAGGCGGTTGACGTC 30407 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 30347 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 30287 28 100.0 32 ............................ TCAATCGGCAGATCGCCAACATGCGGTCGAGC 30227 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 30167 28 100.0 33 ............................ CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCT 30106 28 100.0 32 ............................ GCATTGCACGCTGGTGGGCAACGGGTGCGACC 30046 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 29986 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 29926 28 96.4 32 ....................T....... TTGCGGATCCGGCGGTAGACGACCATCCGCAC 29866 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 29806 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 29746 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 29686 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //