Array 1 78755-78948 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 78755 37 100.0 41 ..................................... AAAAGACTGCACGGTTTACGAGGACATAACTGAAGTCTACA 78833 37 100.0 42 ..................................... TTTGCATTGTCTTCGGCATTGGCACACATATTGTATGCCTCG 78912 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 100.0 42 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : TTCGCGTTAGCGGGACGGAGTCCAAACAGAATGGCGGTATCCCGCAAAGCTTTGAGTAGAATACCCAAAGCGCAGTTTCCGTGTCGTCTTACTACCAATTCTCTGCTTTGCTTTGGCTACCATGTTGGCAGACTCGAAAGTAAACAGAAAGATCAACTGGTAGTAATCCGTACCGAACATATTATACATTATTTTCAGTATAGTTGAGCTTATTATTGACTAGAGTCATGCTCCACCGGGCCGAAATTGTAAAGTTTTGTGCGCGATCTGTCGGGGCGAGCCATCACCAGCCTGACTCTGCCGGCACAAGATTTTAAGGGAAACTTTAGATCTTTTGCCCCGATTGGCCCAAAAACGTGACATAATGGCCGTAGCAAGCTCAATTTCCCCGCTTGCGCTTGGCCGCGAGGACAATGTTAATATCTGTGTCGAGGAATCTCCGTACTCCCTCGCGAACGCACCTTGAAAACCTCATGAATTCAGGCTTTTCCGAGGGTAGG # Right flank : CGGGTGATTCTAAGGACGATTTAGATGATCACCACAATCTGTTGATCCCTACCTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 79568-79831 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 79568 38 100.0 40 ...................................... TGCGCCTTGCGGATTTGAGCGATAGTGATGCTTTCACCCT 79646 38 100.0 38 ...................................... CAGCCTTGGCGTTGGAGGGCCAGAACTGAGCGTTAGCG 79722 38 100.0 34 ...................................... AGAGAGAAGCGAGTAATGAGCAAAGAGAAGTGAG 79794 38 68.4 0 .......T.......C....T.....A.C.T.CCTCTA | ========== ====== ====== ====== ====================================== ======================================== ================== 4 38 92.1 38 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCACCAACCGACCGATGCTCGCGGCTACTTCGCCCG # Right flank : AACCCCCAAAACCCTGAACTTTGCTGAATTTACTGAGCTTTAGGCGGTTTGGCAAAAGTCATTGAGAGGGATATAGTAGACCAAGTTTCCCCCTGATCCTTGAGTCCACCGCAACGGTTGCCGGGAAGTGAAGGGGGAAAGCGCTCGGGGGGTATTCCTCAGGGCTTTGCGGGATACCGCCTTCCTGCTTGGACTCCGTCCCGCTGACGCGAACAGAGATAGGCAGGATGCGATCGCTTCTTTCCTGAACCATGTTCAGGAGAGTTCAGTGTGAATGTATCAGGCTCAACAAAGTACCTCAAGTCATCTAGGGAAGACTGCTCGACGAGTAGTCCTGGGATCCAGACTGGAGAGAGCGGCGGGCCAGCTTGGCATAGGTCTTCACCGTCTCGTAGGGCATCTCCAAATCAGCGGCGATCTGTTGTAAGCTCTCTCCACCTTCGCGGCGGGCCAGGATCGTCGCCCACAGTTGGGCAGTTTTTTCGGCGCGGGATCCCCCT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 236342-236815 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 236342 29 100.0 35 ............................. AACAAGTGGGCGCCCAAGCTGCGGGAGTTCACCGG 236406 29 100.0 35 ............................. GAAGCACAACTTGAGCGGGAAGCCCACCGAATAGC 236470 29 100.0 34 ............................. TAATCCTCTACGTTGGAGTGACGGACAAAGAGTC 236533 29 100.0 35 ............................. ACCTGGCTAGTCCCCGCAATAGCGGTGGCACTGGA 236597 29 100.0 35 ............................. CGAAGGCGGCAGGCTTGGAGATCGTGGGAGCGTAC 236661 29 100.0 34 ............................. AAGTCGGCCCGGCCCGCGGGACGGCAGGACTTCA 236724 29 100.0 34 ............................. AAGGGAGGGCCCTGACCCGGCAAGGGATCCGTCC 236787 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =================================== ================== 8 29 99.6 35 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : TTGAGTCGAGAACTAGGCAACTGTGTCGAGAAAAGTTTGTAGAGCATCGGTTGATGCAGAGAATCATAGACGATGTTGATGCCATCCTCGGCTTCAGAGCCACACAGGAGGAGTCAAGCCCTGTAGGATCTCTTTGGGATAACGAGAAGGGAGCTGTTGAGGGGGGAGTGAGCTACGGAGAAGAGTTGGATGAGGAAATGTCGGTCTGATGGTGGTCTTTATCTTAGAGAATGTCCCCGCAAGTTTGAGAGGAGACCTAAGTCGCTGGCTGTTTGAGATCAAGGCGGGGGTCTTTGTCGGTCGCGTCTCAGCCCTGGTTCGAGAAGAACTGTGGGCACGGGTGACCAGCAAAATCGGCGACGGCTCTGCACTGATGGTCTATTCCACCAACTCAGAGCAGGGATTCTCGGCCAGGAGCATCGGGGATCCCTCGCGGCAGCTAGTAGACATAGAAGGGGTGCTGCTGGTCAAAACCTACTAAAATCGGCAAAAATGGAAGG # Right flank : AATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTACGTTGTCCCCACATCTGTGGAAGCATGACTCTAGTCAATGATACGCTGGACTATACTGAAAATAATGTACAGTATGTTCAGTATGGCTGCTTGGTATGGCTAGGTATGTAAAACCGAGAGAAGCGGCGGATTATTTTGGGGTGTGTCTCCACACCTTGAGGCGATGGGAACAGAAAGGCTGGATCCATGCAGTACGTACACCATCCGGTAGGGCGAGAAGGTATGACCTCGACAGCTACATCAGAGCACCCAAGAAGGACAAACGAGTCGTTTTGTACGCCCGAGTTAGCAGTCGAGGGCAGAAACCAGACTTGGAAAGACAGATTGCAAGACTGGTTAACCTCTACCCTGGAGCCGAGGTGGTCGGAGAGATTGGCAGCAGTCTCGACTTCAAAAGACCAAAGTTCCTTGCCTTATTGGAACGAGTTCGTGCGGGAGATGTCGGAACAATTGTGGTCGCTCACCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1351320-1351504 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1351320 36 100.0 39 .................................... GATAAGGCCCCGGAATCATTTCTGTCATCCAACCAAAGC 1351395 36 100.0 38 .................................... ACGCTTACGCGGTCACCGTCGAAATCACCGCCCATTTG 1351469 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CCTTGTGATAAGCGCCGCAAGAAAATTGCCGACCTGCTAGAAGGCTACGGCAAGCGCGTGCAATACAGCGTGTTCGAGTGTGTCCTCGACAAGGACAAGTTCGAGGAGCTCAAGCTACGGCTCCGGAAAAGGGTCAAGCCCGATGAGGACAGCGTCCGCTTCTATCCCCTCACCAGCCACGCCCTTGACCAAGTGGAAATCTGGGGTGGGCCCCCCTTAACTGCACCCCCCCACTCGATCGTTGTCTAGCTCAAGCAACTCTCCACCCACTTCAGTACTTGATGTTCTCAAAAGCACACAAAAACGGTATCAACGCTTTTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCTCTCCCAAGCTCTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATGGGTCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : CAGGACTTAGGATCACTGTGGGCACAGCTGAGCAGATGGCGAGATTTTGGTCAGCATGGCAGAGAGCAGGGGGGTAGCTATGCCAGAAGGTTGGGAAAAAGTTACAGATTTAATGCGCCAACTGCAGGCAGTACAAGAGATTGCCGAGAGGGGGTATTGGCTCACCACGGAGGAACTGGGGCAGGTTTTAGGTTTACCAGAGTCCCGCTTGGCAATTCTGCGGGAACAACCCCTCGCCTATGAATTTCCGTGGCGCAACTTCCGCTGTTGTGTAGTTGACGAGCAAGAGGGGATCAGGCTTTGGTCTATCACTCCTAACAAGGCTATCAATGTCCACACCCCCACCACCGCGCCCCAAAAACAGCCTGCGGTCTATGCACGGGTGGATAACTTTTTGCCGCGGGACAAAAACCAACAGTTACTAGAATATGCGATCGCCAACGAAGGGCGGTTTGTCCCTTCCCGAAACTCAGCGGATGACAGTGAATACCGCCGTTCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 1352651-1353225 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1352651 36 100.0 38 .................................... GATTAGGCTAGGGGTTGCTCCCCCTGGAGTATTCTCAG 1352725 36 100.0 43 .................................... ACGCTTGACCAACAGACGGAGGAAAGCGCGATTCATTTTACAC 1352804 36 100.0 38 .................................... ATCTTTGGCAGCTTGGCGCGCCTTGCGCATCACTGCAA 1352878 36 100.0 42 .................................... CCCTTTGAGACTCCCAGCCGGAATCCGATCCAAGAAGATCGG 1352956 36 100.0 39 .................................... GTCCTTGGATCTTCCATGCCACCTACGGTGAGCAATATT 1353031 36 97.2 49 .........................G.......... TTTGGAAACTCCCCCTGCTGTGTTCCAGGGATGATCTGGATCCCCTGAA 1353116 35 86.1 39 ...AT.....-A.A...................... CGCTCCCGGCATTCCGAGAGCGGCAAAGGTTTTAGCAGT 1353190 36 75.0 0 ...TT...............TTG....G.CA....G | ========== ====== ====== ====== ==================================== ================================================= ================== 8 36 94.8 41 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : ATTACAAAGTGCACAATGACAACGGCAGTCCTGATGCCAAAGAAAGGGAACTGACCTATGTCTATTACTTCTACCGAGAACCCAAGCAGTTTTCTGGGGGGGAACTGCTGATCTACGACTCTGAAGTGCGAAACAATATGTATGTCAAAGCCGACACCTATAAAACCTATGTTCCTGCCAACAACACTATCATTTTCTTTCCCAGCTATCTGATGCACGAAGTTTTACCCGTGACTTGTCCCTCACGGCAGTTTGCCGATAGTAGGTTTACGGTCAACGGCTGGGTACGGCGTAAATAGGCACATTGGGCGAAATGATACAAGTGCGGGTTCTGCCCCTGCCAGTGCAAACGATGCCATTGGACAAAATGGTGTAGCCAGTGGTTGCCCCTGCGATCCCGCCCGATGGTCGTCCCTTGACTGCTGGTGGTCTGCACAAAGTGATTACCACTGATCACATTCCCCCCCCTCAACTTTGACACTGCCATCGTCGTTGTAGTA # Right flank : GAAAAAACTAGCCCTTGATACACAGAATGGGTCTTAGGCGCGCTACGAGTTTCGCGATCTTGGCTTGGTCGGCAGCGCGCACAACTTTATCTACGTTTTTGTAGGCCTGGGGCGCTTCTTCGGCTACCCCCCGCAAAGAAGGGCTGCGGACGATGACGCCGCGCCGCCTCAGTTGTTCGACGATCTCCTGCCCTGTCCAGGCTTTGAGAGCTTGGTTGCGACTCATCGCCCTTCCGGCGCCGTGGCAGGCCGAGGAGAGGGAAAGGGCCTCACTTTGCTCCGTGCCGACCAGAATGTAGGAGGCCGTGCCCATGGAGCCGCCGATGATGACCGGCTGACCGATAGAGCGGAAAGCCTGAGGGATCTCTGGGTGGCCAGGCCCAAAAGCGCGCGTTGCCCCCTTGCGGTGGACGAACAGGCGACGTTTTTTCCCCTCTATCACGTGCGTCTCCTCCTTACAGGTGTTGTGGGAGACGTCGTAGATAAGGTCGAGTTCAGCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 1577952-1579181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1577952 36 100.0 39 .................................... ATTGAGGAGCTACCAAGCCTTCTACCATATCAGCAGGAT 1578027 36 100.0 40 .................................... CTCTTCTTGAAGTGCGGGATGTATATGTACTGGACGGTAA 1578103 36 100.0 35 .................................... CTGAGTCCTTGGTTTATTCGTGGCGGCCGTGTCGA 1578174 36 100.0 43 .................................... TATTAGTGCGAAAAATAGGATGCTGCTCTGTCTTATACTTAAT 1578253 36 100.0 40 .................................... GTAAAGACTGTTAGTAACCAGTCGCTTGCGAACGAATCGG 1578329 36 100.0 35 .................................... TGTAGTACAGGGGTGTGTGGGTGATCCCGCCAGAA 1578400 36 100.0 38 .................................... GGCAGGATGTAGCCCAGTCAGGACTGGGTATACCATCA 1578474 36 100.0 37 .................................... AATCTTGAATGTGTTCATACGGACTCCTTTGTTTAGA 1578547 36 100.0 38 .................................... CGCTCACGCTTTTGCGCTTTGCGCAGCTCAGTAATGCT 1578621 36 100.0 40 .................................... TGTAAACATCTGCTCTAGTTAAGGAAGTTGTTAAAAAAGG 1578697 36 100.0 37 .................................... AGTAGAAGCGCTTACCGCCTACATCCCGCACTATGAG 1578770 36 100.0 37 .................................... GCTCCGAAATGTACCACCCACCGTATGCCCAGATACA 1578843 36 100.0 37 .................................... GTTTATCCAGTGAATCTGTTTCGATAGACCCAGCAAA 1578916 36 100.0 41 .................................... CCTTGCGCAACTGCGAAATAGTAACTGTAGTACCCTTGGGA 1578993 36 100.0 44 .................................... ATTACTATGAACGCCAAGTTCTTGCGAAAGTTAGTTGTTTGCTT 1579073 35 97.2 38 ...........-........................ TTCTCCAGCCGCTTATTCTGGAACCACGTAACTCCATT 1579146 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ============================================ ================== 17 36 99.3 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GCAAGCCGGTCATGGCTGCCCCGATGGCCAAGCCGGTGAAGCTGTTTTCGCAAATGGGGGTATCCAGGAGGCGCATCTCCCCGTATTTGCGATATAGGTCTTTGGTGACTTTGTAGGAGCCGCCGTAGTGGCCCACATCCTCTCCCAGAACAAACACATTGGGATCCCTGGCCATCTCTTCGTCGAGGGCGGCACGCAAGGCATTGTAAAGGAAGGTCTCGGCCATAGAGGGCAACCGCTGCTCAAAAATGTTGCTAAGTTTCCATTAAACCATTTTGCCGGCAGGGATCCGCTGGCAGACAACCCGCTGGGCAGGGCACCTCGCCCCTAGGGATCCCAACCCCGGTCATGTTGCCAAAAGCACACCAAAACGGTATCAGCAGCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCC # Right flank : AGAAATAGAAAATGAGCTTGCTGCTGCCGAAGCTAGCCCTGACATTGGGAGATCCGGCGGGGATTGGGCCAGAGATTGTGCTCAAGGCGCTGGCGGATCCCCAGGTGCAGGCCTGCGCCCAGATAACGGTGGTGGGCGAGCGGCAGGTTTTGGAAGCTACCTACTGCCTTCTGCGCCAGCGAGGGGCAACCGACCTGGCCGACCCGGCAGGGATCCCGGTGCTGGAGGGCGGCAGCGGCTTCTACCTAGAGCCGTCGCGCGTGGGCCGGGGGGATGTCGCAAGCGGGGCGGCCAGCTTTGCCTACCTGAAAACAGCTATTGAAGAAGCGCTGCGGGGCCAGTTCCAGGGGATCGTGACCGCTCCCATTGCCAAATACCTCTGGCACCAGGCGGGCTACCCCTTCCCTGGCCAAACAGAAGTTCTGGCCCAGCTCAGCGGGAGCGAGCGCTACGGCATGCTGTTTGTGGCCCGTTCTCCCCACAGCGGCTGGCAGATCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 1947451-1948089 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1947451 36 100.0 38 .................................... AGGAAGGAAGATATACGTGCTCGTATACCTCCTCTCTA 1947525 36 100.0 40 .................................... CTTGAGTAATGAACTCCAGTTGCTTCTTTTTGTTTTTCAT 1947601 36 100.0 42 .................................... AGAAACGAGTTTCTATGAATTGACGCTCTCATTCAACAACAA 1947679 36 100.0 38 .................................... TTCTAAATCAAACAGGCGACTGTCCAGCTCAGATTAGG 1947753 36 100.0 37 .................................... GCTCATACCTCCGCCGCTGGTAGAGGCGGTGGGGCTG 1947826 36 100.0 41 .................................... GGTCGTATAAGCGTGTAATAACACGCACATACTTTCCGTCA 1947903 36 100.0 41 .................................... TTCAGGCGAAACTGAACGGGGCAGCCCACGAACACTTTCAG 1947980 36 97.2 38 ..............A..................... AAAAGAAAACCTGCTACCCAGTGAGTAGCGGGTTAGTG 1948054 35 75.0 0 .C..T......-A...A...T.C...........GG | A [1948084] ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 96.9 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CCCAACGCTGGAACCTCACCATCCAAGAGCTGGAAGACCTCCGCATCAGCCTGGATCAGTCGGCCAACCGCCTCTCCTACAGCATCCTGGTCGGATCCCTGATTATCGGCGCCGCCATCATCTCGGCGCAAACCCAGCGCTTCCAGGTCTTCTGGCTGAGCGAGCTGCTTTTTGGCGCCGCCAGCCTCTTGGGACTGTGGCTCATCCTCAGCATCCTCCGCTCCGGTCGCCTGCGCAATTAGCCCCTAGCTCGGACTTGCCAGGGATCCCGATCCTAGCCATGTTGCCAAAAGCACATAAAAACGGTATCAACGCTTCTGCGAGCGCCTCGCCAAAACCCGCAAAAGCCGATTTTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCTCCTCTGCAAGGCCTTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCCGCTTGGGTTTAATAAGGGTAGA # Right flank : GCGGCTAAGGAACTCCGAGTAGATCTCGGTATAGGCCTTGACCCACTCGGGATCGGGCTGGATGAGGCGTTCCACCTGCACCAGCCGATCGGCAGCCTGCTGCACCGAGCAGCACCAATAGGCCGAGGCGGCCAGGACAGCTGCCCCTACGGCGGCCTCGGGGTGCTTGACCACTGCTAAGGGGCGGGCAAGGAGGCTGGCGCGCAGGCGCAGCCACAGAGGGCTTTTGCAGCCGCCGCCGGTGGTCAACAGCGTTCCCTCTATGGGGATCCCGTGGGCGGCCAAGGTCTCCAGCCCCAGCCGCTCCACCATTGCCACCCCTTCCAAGAGAGCTGCATAGAAGCGAGGGGATCCCACTTCCGCCTGGGGCAAGAAGCCGGCAAATTCACTATCCAGGATGGGAAAACGCTCGCCGGGTCGGCAGAGGGGATAGCTGACCAAGCCCGTGGGCAGATGGGCTTCCGCCTGCCGATCCAGGGCAGCAAAGTTGCCGCCGGGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 2045847-2045519 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2045846 37 100.0 38 ..................................... GGGCCAGTGGCCCATCGGCAATCAGGCGAAGTATAGCG 2045771 37 100.0 40 ..................................... GCAAATCCTCAGAAGCGAGCGCTGTGAGTACATCCGCGAT 2045694 37 100.0 37 ..................................... GATGGTTTCACCGTCCACAAACTCAACACCCGATTCG 2045620 37 97.3 28 ..................................G.. AACGAAAGCCCCCGCCAGCGCGGGGGCT 2045555 37 75.7 0 A.AT.TATGG...............G........... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 94.6 36 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACA # Left flank : GCCTCGGCAATCAAAGCAGCCGCCCATTCCCCCTCCCCTTTGGCGTGGGCCACCGTCCCCAGGAGATGGAGAGCGTCGGCTTGATCCGGAAACTCCACCAGAATTTCTGAGTAGATGGCTTCTGCTGTCCGCAGGTCGCCAGCCTGCTGGGCCTGGATCCCGGCTAGAAGCTTCTCTGTAAGGGCGAGATCCGACATCGACAGCCACGGAAGCCGGAGAACTTCCCCCACTATAGGCGCTTCAGCTCTATCCAAAACCCTCCTCACCGCCCCCTGAGCCTCATGTTGCCAAAAACACAAGAAAACGGTATCCGCAGCTCTGCGAGCGATCCACCAAAACCCCAAAAGGCTGATTCTTTCGTCGGATCCCTCGACGCCTTGCGCCACAAGGCTTTCAGGCCCCAAAGCCCCCTCGCCAAAGCTCTTTTTGCCAACCTTTTTTCGGATCCCTCGCAAATGGGTCTTGCATCCCTTGCCCTGCTTGGGTTTAATGGGGGTAGA # Right flank : AGGTCTACGGCTACCCGGTGGGCGCAGGCAAACCCGGAGAAAGCAACGGCATTGAGGCCCTGCCCGGGGAAGGTGCTATCGCCCACGCAGTAGAGGTTGGGGATGGCGGTGCGGTTGAAGGGCATGCCCAGCAGGCCCCAGGGAGTGCCGCGAGGGATGGGGCCGTAGGTACCATTAACGCGGCCTAAGAAGCGGCGGTGGGTGCGGGGCGTGCCCACTTCCTGCAGTTCAATGTGGGATCCCAGACCAGGCCAGAGGGCCTCCAGGCGGCGGATGAGACGCTCGGCTGCCGCTTGTTTTTGCTGCCGGTACTGCTCTGGGCTCAAGCCCTGCCAAGTCTGCATCCAACTGGGGGTAAAGGCGTGGACGATGTGGCGGCCCGGCGGCGCCAGCTCCGGATCCAAAAGGGTGGGGATGGAGACGAAGATCGTGCCCTGCTCCGCCTCCAGGTCTTGCCAATCTTCTAGAAGAATGTGGTGGCAGTAGCGCTCGCCGGCCAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 9 2641956-2641017 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2641955 36 100.0 37 .................................... GTCATACAGTCGCGTATGAAGTGTAGCGCTTTTTCGT 2641882 36 100.0 37 .................................... AGCATAGGGTTGGCTGTTTGGTGGAAGCCAACCTTTA 2641809 36 100.0 37 .................................... TTTAAATCGTGCTACCCATTGTACACCAGCTCGGGAT 2641736 36 97.2 41 ...................T................ CGTCGAGATGAGGTAGCCAGGTAGGTTTCAAACGCAGTTCG 2641659 36 100.0 39 .................................... CAGTTTCTTGGGCACAGAGACAAGGCGGTCGTTCATAGG 2641584 36 100.0 40 .................................... ATCCAGAACAAACTTTCGGGCTTGTCTGGATTGATAGTCC 2641508 36 100.0 42 .................................... TTTAAGAACCCTTTCCGGGCGGTGGCTTGCCACCCCCACCTA 2641430 36 100.0 38 .................................... TACTCAGCGGTGGACTCGTCTGACCCGACGGTGTCCGT 2641356 36 100.0 36 .................................... TTGGCAATGTTAAGACGCGTGGCTTTCATTAAGCAT 2641284 36 100.0 39 .................................... AACCAACATGTAAAAGCGTTCGGCGTAGTTATTATGGAT 2641209 36 100.0 36 .................................... ATCCTTGTGTAGTTCGGGATCCCTAGAGCATTAGCA 2641137 36 100.0 50 .................................... GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA 2641051 35 77.8 0 ...........C..............T.G-..TGTA | ========== ====== ====== ====== ==================================== ================================================== ================== 13 36 98.1 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GGCTGCTGTTCGAGGCTGGCCTCAACGATTGCTATCTGTTTGCGCAATTAAAAGATGAAAAGCTGCGGGCGGAGGCAGAAGGCTTTGCCCAGCGACAACGCCAAGCCCAAGGGATCCATTTCCTTGCCATCCAGAGCGATTTCCGGGCCCAGTCCTTCGCCGGCTTTTGGCTGATGCAGTACCCTCTCTAGAACAGTTGTCGGCCTGTCTGCCCCGCCACTCGCTCCGCCCCAGTTGCCTGGGCAGCCCGCAAACCCTTGCGTGAATCCTCAGGCTAGCTATGTTTGCGAGGCAACACAAAAATGGTATCAACGCCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCTGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCACCTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : GGTTGGCCAAGTAAGCGGCTCCCTCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAAAGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 10 2760642-2761232 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 2760642 37 100.0 43 ..................................... TTGCGCCAAATCTCGACGCAAACTTGTTGCCCATTCTGAAACT 2760722 37 100.0 45 ..................................... ACATAGATATACTCGGTAACATAGCCATTACAGCCATGCTCGAGC 2760804 37 100.0 39 ..................................... AAGCGATTTAAACCGACTGGAGTTTTTGGAGTTTTTGTA 2760880 37 100.0 42 ..................................... GAAACAGTCGTAGAACTGCTGGGGGATCCGAGCCAAGCTCGG 2760959 37 100.0 40 ..................................... GGACCAGGCTCCACTGGTTTGGGCTTCCTCACAGATTCGG 2761036 37 100.0 42 ..................................... ATGACTGAAACCTGCCTTCTAAAAATAAAGGAGGAGTGACTA 2761115 37 100.0 44 ..................................... TTACCTTAACAACTTCATCGTTAGCGTTGATAAACTTCACTAGA 2761196 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 8 37 100.0 42 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGCCCCCGCTTTTTGGTAGTCTTCGTCGCTAAAGCCCGCCCCCTGGCCAGCTTGGGTCTCCACCCACACCTGGTGCCCCTGCTCCGTCAGAGCCCGCACCGCCGCCGGCGTCAGGCCAACGCGAAACTCCTGCTCCTTGATCTCTTTGGGCACACCAATGCGCATAGGGATCCCCATAGGGCTGTCTTCCAGTCTAGACAGACCAGCGCTGGGATGGGATCCCTGGCCGACGGGGGGCGGCAGGAATTGTAAAGTTTTGTGCGCAATCTGTCGGGGCGAGCCGTTGTTAGCTTTCCCCTGGCAACACCAGGCTTTAAGAGGAATCTAGAACTGCCTGCCCAAATTGACCCAAAAACGTGACATAATGCCCTCAAAACAGCGAATTTCCCGACTTGCGCTTATCCGGCGAAGCAGTGTTAATATCTGTTTCGGGAAGTCTCCGTACTCCCTCGCAAACGCACCTTGAAAACCTTATGGATTCAGCCTTTTCCGGGGGTAGG # Right flank : CAATAAAAAAGGCTGCCGATGTGGCAGCCTTTGGGTGTTGATCCCTACCCTTTCCCCGCAAGGGGACGGAAACTTTGCAAGAGCTCTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 11 2762578-2762312 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXZO01000001.1 Synechococcus sp. 65AY6Li scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2762577 37 100.0 38 ..................................... TTCGCGACGTCGTCCGAATTGTGTCGGAAGTAAGCTAT 2762502 37 100.0 39 ..................................... GCAGTTGTCGAAGAAGAATAAATGACTGTTGGGAGCAGG 2762426 37 100.0 41 ..................................... TTCCTGCGTCAATTGGTCAAGTGCTTCGGCTTCCTAGCCGA 2762348 37 94.6 0 .......................G........G.... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 98.7 40 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : TGACGGCCTCAGCCTGGCCGAAGAGCCCTTCGACCGCAAGCCGCTAGAGGTCTCCCAAGATCTGGCCGCCCTGATGCAGCCGCCGGTTCCGCCCAACGAGCTGAGCCTGCCGGAGCTGGCGGAGCGCATCTCCCGCCTGGCCCGCTCCAACCTCAATACCCAGCCCCTGCGCACCGAGTTCCACATGCGCTTTTCCCTGCCCTTGGCCAGCTTTTTTGCCGTCTTGATCTCCCTTCCCCTGGGATCCACCACTGCGCGGCGGGTGGGCCGCTATGGGGGTGTCGTCTTCGGGATCCTGTTGGTGTTTGCCTACTACGTGGTGCTGAGTGTGTCTCGCAGCCTGGGCGAAGCAGGAGCCCTTCCCCCCTGGGCGGCAGCCTGGAGCTTCAACATCCTCTTCGGCGGCCTCGGCCTGCTGCTGTTGGCCCGCTTCCTGCGCTAGGGATCCCTTCTGGGCAGAGCAACCCCCGACCTAACCAGGGATCCACCGGATCCCTATA # Right flank : CTCCACTGGTTTGGGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //