Array 1 48775-48537 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000022.1 Cronobacter dublinensis strain cro1014W contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 48774 27 100.0 45 ........................... CACCACACAACATCTCGCCCGCCGTGGCGACGTCATAACATGGCG 48702 27 100.0 45 ........................... AATCCCACAGCGTTACGCCCGCCGTGGCGGCGTAACCAAATGGTG 48630 27 100.0 41 ........................... AATCCCACAGCGTTACGCCCGCCGTGGCGGCGTCATAACAT 48562 26 88.9 0 ....-..G......C............ | ========== ====== ====== ====== =========================== ============================================= ================== 4 27 97.2 44 GGTGCGCTGCGCTTACCCACCCTACAA # Left flank : GCCGAGACCATGCTGCGCGCCATTATGGATGAGCTTAATTACGTCGGCGTGATGGCGATGGAGTGTTTCGTCACGCCGCAGGGTCTGCTGATTAACGAGCTGGCGCCGCGCGTGCATAACAGCGGCCACTGGACGCAGAACGGCGCGTCCATCAGCCAGTTCGAGCTGCACCTGCGCGCTATCACCGGCCTGCCGCTGCCGCAGCCGGTGGTCAGCAGCCCGTCGGTGATGGTGAATCTGATTGGCAGCGATCTCAATTACGACTGGCTCAAGCTGCCGCTGGTGCATCTGCACTGGTACGACAAAGAGGTGCGCGAAGGCCGCAAGGTCGGCCACCTTAACCTCAGCGACAACGAGCCGGCGCTGATTGACGCCACGCTGGAGGCGCTCGCGCCGCTGCTGCCGCCCGAGTACGCCAGCGGCATCGCCTGGGCGCAGGCGCTGTTACGCTAAGAGAAAGGCACCCCAGGGGGTGCCTTTTTATTTTGTCTGTGAAGGTG # Right flank : CGCTACAAAATCCCACAGCGTTACGCCCGGCTCGTAGGGCGGGTAAGCGAAGCGCACCCGCCGCGCCGCGCATCGTTATGCCCCTAGCGCCTGCTCCAGATCGGCAATCAGGTCGTCCGCTTCCTCGATCCCCACCGACAACCGGATCAACTGCGGCGTGATGCCGTTTGCGAGCCGCTGTTCAAGCGGGATCGAGGCGTGCGTCATGCTGAAAGGCTGGCTCACCAGGCTCTCGACGCCGCCCAGGCTTTCGGCGAGCGTGAAGAGCCGCAGCGTTTTAATCACCTGCGCCGCGCGCGCTTCGTCGCCGCGCACCACTATCGAAATCATCCCGCCTGAAAGCGCCATCTGGCGGCGCGCCAGCGTATGCTGCGGGTGGCTTTCCAGCCACGGGAAAAACACCTTCTCCACCTGCGGATGCTGCTCCAGCCGCTGCGCTATCTTCAGCGCATTCGCGCTGTGACGCTCCATACGCAGCGCCAGCGTGCGGATACCGCGCA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCGCTGCGCTTACCCACCCTACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 4-1375 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000033.1 Cronobacter dublinensis strain cro1014W contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4 29 100.0 32 ............................. GGATTCTGCTCTCGATCTTCAGTTGATGTGGC 65 29 100.0 32 ............................. CTACCGGCTCCGCCCGCTCCCGCAGCGCTGGC 126 29 100.0 32 ............................. TCCGAAATTGTATTCAGTTTTCTGAAAGCCCT 187 29 100.0 32 ............................. TATTTCACGGCAGCGTAACTGATATCCCGCTG 248 29 100.0 32 ............................. ACGCAGATTGCCGCCGCTGTTCGCTCCGGTTC 309 29 100.0 32 ............................. GGCGGCGAGGCGAACAAACTGCTCACTATGCT 370 29 100.0 32 ............................. GAATCATAACCGCAATTACCGACGACCCTCGC 431 29 100.0 32 ............................. TCCTTGTTGGCGGCCACGTTCTCCAAAATTTC 492 29 100.0 34 ............................. CGCTGCAATGGATGCTCGATGATGGCGTGGCTGC 555 29 100.0 32 ............................. CGCCACCCGCGCGCAACGGCGGGCCGCCTGCC 616 29 100.0 32 ............................. ATTTTGGACACTCTGGCGTATTCAGCTGCAAG 677 29 100.0 32 ............................. TTCCCTGACTCGATCAAGCCTGAACATGTTCG 738 28 96.6 32 ................-............ CAACTCGAAGTAGTGGCTAATAAATTACGCGC 798 29 100.0 32 ............................. TCGACGAGGACGTCTTTTTCTCAGAGATACTC 859 29 100.0 32 ............................. ACCATAATTGAAGCTGAGGAGGCTATAGCCAG 920 29 100.0 32 ............................. AACGGCGCCGCGGTTGCTTACTGGGTCACTGA 981 29 100.0 32 ............................. TAGTCCGAGTCTTTGCTCATGACGCACCCCAA 1042 29 100.0 32 ............................. GCAGGCGATCGTAATACCTGGCGCAAAGACGG 1103 29 100.0 32 ............................. CGCTGCACCGCTGGACGCGGTGGCCTTTTTGC 1164 29 100.0 32 ............................. AATAAAGAAGAATATGCGGCGGCACAGCGGCA 1225 29 100.0 32 ............................. GACGCGGGTATTTACATAGAGCAAAACAAGAC 1286 29 96.6 32 A............................ CCAGCCAAATGGCCAGAGGGGGGCCCCGGGCT 1347 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================== ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTG # Right flank : GAACCCATTCGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGTTCAACCACCCGACAAGGCAAACATTCGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAATCCCAAAATAACGGTCTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28034-29179 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000033.1 Cronobacter dublinensis strain cro1014W contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 28034 29 100.0 32 ............................. TCGGGAAACAACTCGAAGTGGTTGCAAATAAA 28095 29 100.0 32 ............................. TCTGCAAACAGGAGGTTATCAACAAGGCTGTT 28156 29 100.0 32 ............................. ATCCCCGATGTTGCGGCGTGGGCATCAAACAG 28217 29 100.0 32 ............................. CCGGCGGTAAGGAATACACGTATTTAATTTCT 28278 29 100.0 32 ............................. CCTGCTAAATCCCGCGCGTCCGCAAAATAATC 28339 29 100.0 32 ............................. TAGGCGCGCAGGTCTCCAGGACGCAGATAAAG 28400 29 100.0 51 ............................. GTTGCGACCATGATTGAAGAGCGCTCGCGCGCGTGTTCCCCGCTCGCGCGC 28480 29 100.0 32 ............................. ACGGCATGGAACCAATGGCGGCTTCTTTTAAA 28541 29 100.0 32 ............................. TGGTCCCGTCTGACGCTGTTCAGATGCTGCGC 28602 29 100.0 32 ............................. CAAATCATCCAACTCATCGGGGCTAAAACCGG 28663 29 96.6 32 ..................A.......... TAACCGGCAATATGTACGTGGACAGGCAGGCC 28724 29 100.0 32 ............................. GCCGGGTACTCCATTGTCGAAATATCAGCGGG 28785 29 100.0 32 ............................. GATCTTGCAAACCAGGCCAGATATCAGTCGCT 28846 29 100.0 32 ............................. CTCGGGCACCATAGTTTGTAACGCCAGGTCGA 28907 29 100.0 32 ............................. CGGGTTATCAATCAGAATGGCTGGTCATCGTC 28968 29 96.6 32 ..........................A.. TCAAATAACCATGCGCTCGAACTTTTTGCAGA 29029 29 100.0 32 ............................. GCGGAGTGGCCGGGATGCTCGGTAAACTGGTC 29090 29 100.0 32 ............................. ACACAATCAAAGGGCCGCAGCAGAAACAGTAT 29151 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= =================================================== ================== 19 29 99.5 33 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGATATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCCTTAAGAATGTGGAGATGTAATGAAAAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAGAAAAACCTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTAGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCGGTGGTATATAAAACATTTCAACGATTCGGCTGATAATCTGCTGAACAGTAAAGAAATAGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGACACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAAGCGCAGGACATCATGCCTGACTGGCCAACCCATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGGCGTGGTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78817-78309 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000005.1 Cronobacter dublinensis strain cro1014W contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78816 28 92.9 33 .................T..T....... ATCTACGCGCTTAAACTCGATCACCCACACCCA 78755 28 92.9 32 .................T..T....... TTGTAAATGAGTTAAAAACATTTCAGGGCAAT 78695 28 100.0 32 ............................ GCTGCCCAGCGCTGGAGAGTGAGCATTTTCAT 78635 28 100.0 32 ............................ AAATCGACGGCGCGAGGGATGAAGCGTGAAGC 78575 28 100.0 32 ............................ GTCACACGCTCTATCACTGAGCATTGATAGTC 78515 28 96.4 32 .....T...................... ATCGTGGACAGCATCAACCGTGCCGACAAGTG 78455 28 96.4 32 ..................G......... GGCTCCGGGTTAATTCATCAGGCACTTGGACA 78395 28 92.9 32 ...........TA............... ACTGACGCCTCCGGGCTTCGCTCTCCGCGATC 78335 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.5 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGTGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAAGCCGCGCGGCAAAGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGAATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAAATGCCTCGCTAACCTGTTGATTTATATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATCAAAATGTATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGATGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCTGAGCAGCGCGCCGCGACGTGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88578-87289 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000005.1 Cronobacter dublinensis strain cro1014W contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88577 28 100.0 32 ............................ TGCGCGCGCAGCTGGTAGCGGCAACGCGGGGC 88517 28 100.0 32 ............................ CATAATGCATAACCTCTTTCAACCCACTCTCT 88457 28 100.0 32 ............................ GGCGTGCGCGTAGAGCGCCTGAACGATATCAG 88397 28 100.0 32 ............................ GCCGAGCGCAAACCACTCGGCCGCCACGCGGC 88337 28 100.0 32 ............................ AAAAAACAACCGGCTTTTCTGTTACCTCGATT 88277 28 100.0 32 ............................ TTGAGGATGCTGAAGCCAGCTGTCTGAAGTAC 88217 28 100.0 33 ............................ TTTGTGGCTGTCGCTGCCGGTCTTGGCACATAT 88156 28 100.0 32 ............................ TAGGCAAATGTTGTATGGCCTACCGATAAGGT 88096 28 100.0 32 ............................ ACAGCGTCACGAACGAGCCGCGCGCGCTCAAC 88036 28 100.0 32 ............................ CTCGACCACTTTAAACGGCTGCATTGCCGTCG 87976 28 100.0 32 ............................ AAACGTCACCGGCCCACTATCCGAGACCCACG 87916 28 100.0 32 ............................ GTTCAGCGATATACGGAATATAAAGGCACGCA 87856 28 100.0 32 ............................ GTCACGCTGAAATTTAATCTCGTTGTCAGCAG 87796 28 100.0 32 ............................ GAAATGCGGGGATAACTTTAAGTGGCAGACCC 87736 28 100.0 33 ............................ TGACGTGATCGGCGGCACCGGTGAAGAGAACGA 87675 28 100.0 32 ............................ TAGTTAGAGCAAACGCCGGTGGTGCACTGTCT 87615 28 100.0 32 ............................ GTCGTCGGCAGCAACGTACGCTACGCGCGAAT 87555 28 100.0 32 ............................ TGCACGGGTGCAACGTATGACGACACGGGGTA 87495 28 100.0 32 ............................ AGAGCACGGCGACGAGATACGCCTCGACGACA 87435 28 100.0 32 ............................ AGCGGGAATGTGCCGGGTTCAACTGTACGCCA 87375 28 96.4 32 ...T........................ TGGTGAGTTCTCTCGCGGCGAAGGGCCAAGGA 87315 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCGATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGTAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGCTATTGATTTTTATAGCGCTCGACTTTCACGTTTAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCGTTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATGAATAAACTTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGGCCGTGCGCATGGGCTGATATATTTTAAAAATTAAAGGGATGTCACGATATGGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGATCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCCCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82045-82195 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRON01000014.1 Cronobacter dublinensis strain cro1014W contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82045 29 100.0 32 ............................. GCCGTTCCCGTCAATGCGCCGGTGACCATTTT 82106 29 96.6 32 ............................C CGTTCGCGTGGTATCTAGCGGCGGCTAAGGGC 82167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGTGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCATTCACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAACCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : ATCGTCACAGTGAAATAGGTGTTGTAGGTATTGTGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //