Array 1 89446-90406 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTIT010000013.1 Listeria welshimeri strain FSL W9-0823 NODE_13_length_95746_cov_89.874829, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     89446	    36	 100.0	    30	....................................	GTCCATTTCAGTACGTATTCCTCTTCTGAT 	
     89512	    36	 100.0	    30	....................................	CATAAAAACAGTTCAAAACGGGCGTTAAAC 	
     89578	    36	 100.0	    30	....................................	ATTCAACTTACAAGCAATCCACAACCAGGT 	
     89644	    36	 100.0	    31	....................................	CTATGTGTTTCGCATGGTTTGTATGGGAAAG	
     89711	    36	  97.2	    30	........................A...........	TAGAAAATCCGCTAATAGTTGACGAATACT 	
     89777	    36	 100.0	    30	....................................	TGACGATGGGTCAGATAACACCGAAGAGCA 	
     89843	    36	 100.0	    30	....................................	TTGCCGGACAGAGGCTTTGTATCTGATCGT 	
     89909	    36	 100.0	    30	....................................	TGAATTGTATCTGTTTTCAAGTTGCTGCAG 	
     89975	    36	 100.0	    30	....................................	ACTCACGAACTGACAGCAAAAGGTTTGAGA 	
     90041	    36	 100.0	    30	....................................	ATGAAGTAGTAGACGCACGTGTTTCTTCTC 	
     90107	    36	 100.0	    30	....................................	ACAATTATCTGAGGTGGAAGCAGAGAGAGA 	
     90173	    36	 100.0	    30	....................................	AAATAGCTTTAGTCGATTCCAGCGATCCTT 	
     90239	    36	 100.0	    30	....................................	TGATCTGTTTTATTAAAATATGTACCTGTA 	
     90305	    36	 100.0	    27	....................................	GAATATTCTCCCCCATCGCTAACAGGG    	
     90368	    36	  83.3	     0	............CA.....C.....T.A.......G	|                              	A,A,C [90393,90399,90402]
==========	======	======	======	====================================	===============================	==================
        15	    36	  98.7	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATTACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTGCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCAGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTAAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAATAGAACTGCTGATCTAGAATTTAACCATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTTTA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//