Array 1 8277-9925 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFN01000126.1 Pseudomonas aeruginosa strain TUM17825 sequence126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8277 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 8337 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 8397 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 8457 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 8517 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 8577 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 8637 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 8697 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 8757 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 8817 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 8877 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 8937 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 8997 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 9057 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 9117 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 9177 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 9237 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 9297 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 9358 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 9418 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 9478 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 9538 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 9598 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 9658 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 9718 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 9778 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 9838 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 9898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9744-8399 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFN01000058.1 Pseudomonas aeruginosa strain TUM17825 sequence058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9743 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9683 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9623 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9563 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9503 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9443 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9383 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9323 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9262 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9202 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9142 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9082 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9022 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8962 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8902 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8846 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8786 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8726 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8666 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8606 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8546 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8486 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8426 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23565-22637 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFN01000086.1 Pseudomonas aeruginosa strain TUM17825 sequence086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23564 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 23504 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 23444 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 23384 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 23324 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 23264 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 23204 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 23144 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 23084 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 23024 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 22964 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 22904 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 22844 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 22784 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 22724 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 22664 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //