Array 1 3080327-3078850 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016385.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST931R chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3080326 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3080265 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3080203 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3080142 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3080081 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3080020 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3079959 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3079898 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3079837 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3079776 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3079715 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3079654 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3079593 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3079531 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3079428 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3079367 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3079306 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3079245 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3079184 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3079123 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3079062 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3079001 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3078940 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3078879 29 96.6 0 A............................ | A [3078852] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3098013-3096459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016385.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST931R chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3098012 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3097951 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3097890 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3097829 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3097768 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3097707 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3097646 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3097585 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3097524 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3097463 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3097402 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3097341 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3097280 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3097219 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3097158 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3097097 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3097036 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3096975 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3096913 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3096852 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3096791 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3096730 29 93.1 32 A............T............... TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3096669 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3096608 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3096547 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3096486 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //