Array 1 108029-106371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDD01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3273 NODE_7_length_178926_cov_4.72834, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108028 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107967 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107906 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107845 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107784 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107723 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107662 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107601 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107540 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107479 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107418 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107357 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107296 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107235 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107174 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107113 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107052 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106991 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106930 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106827 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106766 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106705 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106644 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106583 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106522 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106461 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106400 29 96.6 0 A............................ | A [106373] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125413-124287 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDD01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3273 NODE_7_length_178926_cov_4.72834, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125412 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125351 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125290 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125229 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125168 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125107 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125046 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124985 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124924 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124863 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124802 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124741 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124680 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124619 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124558 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124497 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124436 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124375 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124314 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //