Array 1 44872-46303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBJ010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 286 A NODE_7_length_225114_cov_40.1062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44872 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 44933 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 44994 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45055 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45116 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45177 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45238 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45299 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45360 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45421 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45482 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45543 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45604 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45665 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45726 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45788 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45849 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45910 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 45971 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46032 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46093 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46154 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46215 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46276 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62435-64460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBJ010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 286 A NODE_7_length_225114_cov_40.1062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62435 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 62496 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62557 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62618 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62679 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62740 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 62801 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62863 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62924 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 62985 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63046 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63107 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63168 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63229 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63290 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63351 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63412 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63473 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63534 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63595 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63656 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63717 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63779 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 63840 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [63882] 63882 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63943 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64004 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64065 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64126 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64187 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64248 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64309 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64370 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64431 29 96.6 0 A............................ | A [64457] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //