Array 1 183-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000067.1 Cronobacter sakazakii strain 496G contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182 28 100.0 32 ............................ AAAATGACGCTGGCGGCGCTCGACGCCACATT 122 28 100.0 32 ............................ GCACCCGGCCCGCGACTTGTTGCGAACGTCTT 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCAGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCCTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGGTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCGGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTAGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCATTTATGTTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : AAACGAGTGACGACGCCTGCGACGCAGGCAGCAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9282-8893 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000067.1 Cronobacter sakazakii strain 496G contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9281 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 9221 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 9161 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 9101 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 9041 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 8981 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 8920 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAATTACGTGTTCACGG # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 299-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000023.1 Cronobacter sakazakii strain 496G contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 298 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 238 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 178 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 118 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 58 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATGTCTCAACTGGTCGATAACCACAAAGCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51899-51696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000004.1 Cronobacter sakazakii strain 496G contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 51898 29 96.6 28 ....A........................ ATTCACATCAAACCCTTCACGTTATGTC 51841 29 100.0 28 ............................. ATTCACATCAAATCCATCGCGTTATGTG 51784 29 100.0 31 ............................. ACACACGTCAAAATACCAGTCGCGCCTGTTC 51724 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= =============================== ================== 4 29 98.3 29 GTAGGGTGGGTAAGCGGAGCGCACCCACC # Left flank : CACCATCAAAGGCTCGGTGGATCGCGCCGAGATGCATTACATCATCCGCGATTTCGACCGCGAGAATTTCGAAGCGCGCAAACGCCGTATGATGGATATCGCGAAACAGGTCGGTAAGGGGCTGCACCCGGATTGTTATATTGAGCTGGCCATCGAGGACAGCTATTACAATATGAGCGAGAAGGTGGCGGAGCATCCGCATATCATCGAGATTGCGCGTCAGGCGATTGTCGATTGCGGCATGGAACCGCAGTTAAAGCCGATTCGCGGCGGCACCGACGGTGCGCAGCTGTCGTTTATGGGGCTGCCGTGCCCGAACATTTTCACCGGCGGGTACAATTATCACGGCAAACATGAGTTTGCGACGCTGGAAGGAATGGAAAAAGCGGTGCAGGTGATTGTGCGTATCGCCGAATTGACGGCGCAGCGGGAGGCGTAAAGGCGTAAAAAAGGCGGGTGCGCTGACGCTTACCCGCCCTACAAATTCAGGGATCATTTAT # Right flank : GCGATACCCGCGATAACCGACGCCTTACTCCGCAAAATACCAGTACCCGCTGTTTACCAGCGCGGCCAGCATTGCCAGGAATGACGGATCTTCCAGCGCGTCGCCAAACATCGCCTCATTCAGCACCACTTCATTGGCCAGTTGATGCAGCGCCGGGCGGTGCGGCGTATCTATCTTCTCGCCGTTCACAAAGACGTCCTCGCCGATACGCAATACGCGCAAACCGCCGAGACGTACCAGCGTATCACCCTGTTTCAGCGCATCGTAAATTTCATCCGGCTGGTACGGCGGCTCCGGCGGCGACACATCCAGCTCGTGACGCGACTGGGTGATAAACTCACCAAACCATTCGTTGAAATTATCCGGGTCGCGGATGAGATCCAGCATCATGTCGCGCAGCTTTTCGACTTCCGCAGGCACAATGTCTGCCGGACATTCGCGTGCGGGCACATCCGGATCGCTGTAGCGATGGCTGCCGAGCTCACGCTGCAACACATAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGTGGGTAAGCGGAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 47154-47790 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000009.1 Cronobacter sakazakii strain 496G contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47154 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 47215 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 47276 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 47337 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 47398 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 47459 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 47520 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 47581 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 47642 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 47702 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 47763 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73625-74812 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000009.1 Cronobacter sakazakii strain 496G contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73625 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 73686 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 73747 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 73808 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 73869 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 73930 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 73991 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 74052 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 74113 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 74174 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 74235 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 74296 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 74357 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 74418 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 74479 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 74540 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 74601 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 74662 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 74723 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 74784 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000105.1 Cronobacter sakazakii strain 496G contig105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 ............................ CGGGCGCGCGGTGCTTTGATGTGCTTGGATCT 76 28 100.0 32 ............................ TCTGCTTTCAGGGTGTGGGAAATATCGCCGCT 136 28 100.0 32 ............................ CTGAATCGCGATGGTGTCCAGACAGGCACTTT 196 28 100.0 32 ............................ AGGCGCGAGCGCGCCAGAACGTGCTGGAAACT 256 28 100.0 33 ............................ GCCAGGATATCGGGCTAACCGTCGCTATCAAAT 317 28 100.0 32 ............................ GTACTGAACGAAACAGGCGACGCACCCCAACC 377 28 100.0 32 ............................ TATCTGCGCCGCATGAAACCCACTGACAAAGC 437 28 100.0 32 ............................ AGCACCTGCCCGAGTGGTGCGTTTACGTTGAA 497 28 100.0 32 ............................ ACTATACAGCCAGTGGTACGACTGGCAGCGGT 557 28 100.0 32 ............................ TGCTGGTGTACCAGATGTGGCGCAGGCGCTAC 617 28 100.0 32 ............................ ATCCCGAAAACATCCCAAAAGTTGCCGCTGTT 677 28 100.0 33 ............................ CTGGGTGTGGGTAATCGAATTCCGTCGCGTTGG 738 28 100.0 32 ............................ TGTGCGAGTGGGATAAGGATGACGAGTCTTTC 798 28 100.0 31 ............................ CACACGCACAGCAGATATTTCACCCACGCGC 857 28 100.0 29 ............................ CGGAAAATTTTCAGAGAGTTCGTCGAGGT 914 28 100.0 32 ............................ TTGACGCGCTCGCGACCTATTCCAGCGCGCTA 974 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 1034 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 1094 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 1154 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTCTTGCGCTGCCGG # Right flank : TCGGCGGGTTTTTATCGTCTTTAGTCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14-1120 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLJ01000049.1 Cronobacter sakazakii strain 496G contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 ............................ TCGGGTTTGGCTCCAGCCTGGTTAACAAAGGA 74 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 134 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 194 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 254 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 314 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 374 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 434 28 100.0 32 ............................ CACCCGGCGAACGGCAGGAAACACCAGGCGGG 494 28 100.0 32 ............................ AGAGGTTAGCCGCCTCTAACGTTTTGTTTATC 554 28 100.0 32 ............................ GCTATACGCGTGCCGCCACTCCGTCTCACTCC 614 28 100.0 32 ............................ AGATACGCCGGGCGCAGACCCTCTGTGCCCGT 674 28 96.4 32 ..A......................... GTGGGATAACGTAACCGACGGCGTGAAAATTC 734 28 100.0 32 ............................ TGCGCGTATACGGGCGAACGGCCGGCGCCACG 794 28 100.0 32 ............................ AGCGCGCCGAGCGCCGAAAATATGCAGGCGAA 854 28 100.0 32 ............................ GGTGAAATCGCTGGCATCCGCATCGAGTGAGC 914 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 974 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 1034 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 1094 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATCTGCTCATCG # Right flank : AATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //