Array 1 275603-277095 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETW01000001.1 Salmonella enterica isolate STY129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 275603 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 275664 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 275725 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 275786 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 275847 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 275908 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 275969 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 276030 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 276091 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 276152 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 276213 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 276274 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 276335 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 276396 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 276457 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 276518 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 276580 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 276641 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 276702 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 276763 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 276824 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 276885 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 276946 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 277007 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 277068 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 293227-294153 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETW01000001.1 Salmonella enterica isolate STY129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 293227 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 293288 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 293349 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 293410 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 293472 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 293575 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 293636 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 293697 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 293758 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 293819 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 293880 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 293941 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 294002 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 294063 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 294124 29 96.6 0 A............................ | A [294150] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //