Array 1 1916-3143 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAGA01000199.1 Pseudomonas aeruginosa strain HUM-313-D2 PA2_B6_NODE_266_length_3952_cov_35.1925_ID_531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1916 28 100.0 32 ............................ TTCACACGATACCCAGGGTCCAGAACGTCCAT 1976 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2036 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2096 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2156 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2216 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2276 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2336 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2396 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2456 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2516 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2576 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2636 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2696 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2756 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2816 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2876 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2936 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2996 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 3056 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 3116 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10101-7793 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAGA01000029.1 Pseudomonas aeruginosa strain HUM-313-D2 PA2_B6_NODE_70_length_29434_cov_26.8874_ID_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10100 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 10040 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 9980 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 9920 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 9860 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 9800 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 9740 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 9680 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 9620 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 9560 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 9500 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 9440 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 9380 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 9320 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 9260 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 9200 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 9140 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 9080 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 9020 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 8960 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 8900 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 8840 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 8780 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 8720 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 8660 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 8600 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 8540 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 8480 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 8420 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 8360 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 8300 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 8240 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 8180 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 8120 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 8060 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 8000 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 7940 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 7880 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 7820 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //