Array 1 6991-6231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBV01000083.1 Salmonella enterica subsp. enterica serovar Kedougou strain L00102-08 NODE_83_length_16980_cov_4.54248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6990 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 6929 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 6868 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 6807 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 6746 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 6685 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 6624 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 6563 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 6502 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 6441 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 6380 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 6319 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 6258 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-900 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBV01000003.1 Salmonella enterica subsp. enterica serovar Kedougou strain L00102-08 NODE_3_length_123862_cov_4.99743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 78 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 139 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 200 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 261 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 322 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 383 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 444 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 505 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 566 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 627 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 688 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 749 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 810 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 871 29 96.6 0 .......T..................... | A [898] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCCCCCTCCGGACCAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 608-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBV01000108.1 Salmonella enterica subsp. enterica serovar Kedougou strain L00102-08 NODE_108_length_10673_cov_4.98454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 607 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 546 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 485 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 424 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 363 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 302 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 241 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 180 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 119 29 100.0 32 ............................. CCTCGTAGAGAGTTGATCTTGTCGCAACTGGA 58 29 100.0 0 ............................. | C [49] ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGATCTGATTCAACATGTAAGAGACGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //