Array 1 178796-181387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWD010000014.1 Erwinia amylovora strain Ea1-00 Ea1-00_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178796 29 100.0 32 ............................. ACAGATAAGGACAACGGTCTGACTACTGAGCA 178857 29 96.6 32 ............................A AGTTGGCAAGTGGTATTGTTCCCTGATCAACG 178918 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 178979 29 100.0 32 ............................. CTTTAGTAGCCTTTTACGTCTATAGCCTTTAT 179040 29 100.0 32 ............................. CACGGCCCCCGTACTATTGAATCCACCCGTGT 179101 29 100.0 32 ............................. CAGCAGAATAGAAGCCATAATGTCTGTGCGTC 179162 29 100.0 32 ............................. AGAGTTCCCGCTCTCGCGCGGCTTTTCTTTTG 179223 29 100.0 32 ............................. GCATCATCATACGCTTTACCATCACTGCTAAG 179284 29 100.0 32 ............................. ATTGTATCAGAAATATCTATCCAGTCTCTCTG 179345 29 100.0 32 ............................. CTATCTCTATGGGTTAGGCTGATTGGCAGCGC 179406 29 100.0 32 ............................. GTAGAAAAATGCCAGGCAGGTGCAAAATCAGA 179467 29 100.0 32 ............................. TCAAGGGGGTTCAGCGGGTAAGCGCGAGCGTC 179528 29 96.6 32 ............................T CTTTACCGTTCCATACCGGCTCCATCGCCGAC 179589 29 96.6 32 ............................C TGATCTAGGGCTGGAACTTTGTGACAGAGAGG 179650 29 100.0 32 ............................. CCGAAAACCTGTCCCGTCTGCAAATCTGAATT 179711 29 100.0 32 ............................. CTTAGCAAAATGCCCTATTACCGCGCTAACCA 179772 29 100.0 32 ............................. TCATCATCTAGTGAATTCAAATAATTAAAATT 179833 29 100.0 32 ............................. CCAGGTCGTTACGGTCGGCCTTTTCAGCTGTC 179894 29 100.0 32 ............................. CAGTTGAAACCGAAACGGAGTATCGCAAGCAG 179955 29 96.6 32 ............................A GAACGGCCCGCATTGCATTAGCGGTTGACTCT 180016 29 96.6 32 ............................A TTTACGGGAAACGGCGAGGAAGATATTAATTC 180077 29 100.0 32 ............................. CTCAGTATGATGCAGAAGATTCTGGAATCAAT 180138 29 100.0 33 ............................. CACAGTGTTGGTGCGAGAAGTTCAACAGAATAG 180200 29 100.0 32 ............................. AGATTTGAAATGCCACGAGAAAGGCGCAAAGA 180261 29 100.0 32 ............................. AGGCGGTTAAACCAGTGGAGGCAGAAATCAGG 180322 29 100.0 32 ............................. TGGCCGCCCGATGACCGGGATACAGTTGGCAG 180383 29 100.0 32 ............................. CCAGTGCTCCTTTTCGTCCAGGGACTGACTTT 180444 29 100.0 32 ............................. ATAGCGCTGGCAGAGAAAGACGAGCCGTCCCT 180505 29 100.0 32 ............................. CAATTGTTGATTTAAAGCTATTACCTGACGGC 180566 29 100.0 32 ............................. AATGCGGATGCTGTTCCATCGGCGTTAACTGT 180627 29 100.0 32 ............................. GTTACTCATTGAGCGCCTCGCTACTGTTTACA 180688 29 100.0 32 ............................. CCAGCTCAGCCGTGAGCAATCAATCCTCATTG 180749 29 100.0 32 ............................. TGCGCTCTCAATATATGCTCTGCGCCATGCCT 180810 29 100.0 32 ............................. CGTTTTCTGAATAACTTCTCCTTGTCGTAGAA 180871 29 100.0 32 ............................. TCATTACCGCTGGTTACGGCATCGATCACCGG 180932 29 100.0 32 ............................. AGGCTCGATACCCATTTTCCCGATTTCTTTTC 180993 29 100.0 32 ............................. ACAGCAGTGTTTTTTCGCTCTCAAATTTATTC 181054 29 100.0 32 ............................. TGTTGGAGATTGTGAGGGCGAAAGACCAGCGC 181115 29 100.0 32 ............................. GCATTCGCAACTGGCAATGGTGCAAATGTAAC 181176 29 100.0 32 ............................. TTATTGAGGGTGATTCGGGGGCGCAAAATAGA 181237 29 96.6 32 .................A........... AGCTAGAATGCTACGCATCAGCACTGATTAAA 181298 29 89.7 32 A............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 181359 29 82.8 0 ..A.......A.......A.A.....T.. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCATGGTCAATATGGCTGGGGATTTTTCAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190428-192408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWD010000014.1 Erwinia amylovora strain Ea1-00 Ea1-00_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190428 29 100.0 32 ............................. CAAATTATTGCTATTCATGGGCTGTCTAATAA 190489 29 96.6 32 ............................T CGAATCATAGTTACCCCCTCAATCGTCCGAAT 190550 29 100.0 32 ............................. GTTTAGTGTAAATGATGATTCCAGACTATCAA 190611 29 100.0 32 ............................. GTTGCAACGGCTTTTGGGAAGGATCACAAAGA 190672 29 100.0 32 ............................. CAGCTCATTAGCGATACGGGTATAACCATTAT 190733 29 100.0 32 ............................. GTGTTTACGGTACGGCGTGGCGAGATATAGCT 190794 29 100.0 32 ............................. CCGAATGGTATGGCGAATGGTTGAGGGAAAGC 190855 29 100.0 32 ............................. TTCAGTGGCATCCGGATGGACAGTTTCCCCGC 190916 29 100.0 32 ............................. AGAATCAATTGGCTCAAAATGAGTAAATGTAA 190977 29 100.0 32 ............................. CGAGCGTGCCAATTTCTGCCAGAGCTTCGGTA 191038 29 100.0 32 ............................. GCCGGATTATACATTACTGGCATTTGAGCCAG 191099 29 100.0 32 ............................. CAATGATGAGGGCAGCAGAACGAGACTGGAAA 191160 29 96.6 32 ............................A AACGGGGATCACAGTGTAAAGCTGTAATCCCC 191221 29 100.0 32 ............................. GCGATTGCCACCGCCAACCGACTTCAAGAGAT 191282 29 100.0 32 ............................. GAAAAAAATACAGTTGGATTGCAACTAATCAG 191343 29 100.0 32 ............................. AAACGCGACGAATGGGATGAAACATCTCCGAT 191404 29 96.6 32 .................A........... CGTCGAGACGATGCGCCCGCTGTCGATAAACA 191465 29 100.0 32 ............................. CACGTCTTTTTTCGACAGCACACGGAGCGCGT 191526 29 100.0 32 ............................. AAAGGGGAATAGCTAATTTAGCTCCGGTTTTC 191587 29 100.0 32 ............................. CCAACATAGCTACATATATCGCGGCTTCACTA 191648 29 100.0 32 ............................. GCCCGGTGTGTCGTCGATGTAGAGCATGTCTA 191709 29 100.0 32 ............................. TAACGCGCATGACTTCATTTTGTATGAATTAC 191770 29 100.0 32 ............................. ACCTGGTGGGTAGTAGATATCGCTGGCTGCAA 191831 29 100.0 32 ............................. ACCATTTGATCATATCGTTCAGTTTGTCCCAT 191892 29 100.0 32 ............................. CGTGGCGAGTGGACGAGCTGGGCGACCTGCCC 191953 29 96.6 32 A............................ ATTTTACATTCCCACCGAATTTTGCAGCTGCG 192014 29 96.6 32 ........T.................... GATGGGGTACAGCTGCTTCCGTTCAGCCAGAT 192075 29 100.0 32 ............................. CGGGGTAATCTGTGTTCATCATCACGGCGCAG 192136 29 100.0 32 ............................. CATCTCTATAAATTGCGAGATATGAAAAATGA 192197 29 100.0 32 ............................. TTAAATATCGAACCGAAAATAATTTTTATAAA 192258 29 100.0 32 ............................. CTGTACACCGTTGACGGCGGCACCTCCCACCA 192319 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGTTGTCGA 192380 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.8 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCAGGCTACATTACCGGTAAAAGACGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTCTTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //