Array 1 9211-5409 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXN01000037.1 Listeria monocytogenes strain 18ZQLM04 NODE_37_length_15427_cov_80.992614, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9210 36 100.0 30 .................................... CGATACAGTGTAAATGCGTTCTCGCTTTTG 9144 36 100.0 30 .................................... TGATGATGAAGCGAACTGGCTGTACAACGA 9078 36 100.0 30 .................................... GAATTCTAATATTGAGCAATACACAACCAT 9012 36 100.0 30 .................................... GCGTCCTTTTTTTATTAATCATTATCATTG 8946 36 100.0 30 .................................... GTGGACAATCTAATCATAATTACGGTGTTG 8880 36 100.0 30 .................................... TTACCTTGACGGAGCAAGATAAGCATGGCG 8814 36 100.0 30 .................................... AAGATACGTCTGTTTCAGTAATTCCCCACA 8748 36 100.0 30 .................................... TATATATGTCAGTCCCTAACTTCAACGTTA 8682 36 100.0 30 .................................... AAATTGATAAATTCGCACGAAAGAGTTACC 8616 36 100.0 30 .................................... ATCTCTCAACGCGAATTGGCTAATCGTATC 8550 36 100.0 30 .................................... TACATTAGAAAAGCACGAAAGTTGGACAGA 8484 36 100.0 30 .................................... TTCTAATTGTATCCCTCGTTGACCAACATT 8418 36 100.0 30 .................................... CTTATCTAGTGCAAATACAACACTATTTAG 8352 36 100.0 30 .................................... GACGATAAGGGGACTAGTGTTTGGACGGCA 8286 36 100.0 30 .................................... TTATCAAACGGCACGATCCCCATATGCATA 8220 36 100.0 30 .................................... TTTTCAGATTGAACACTCAAGACCTAAACG 8154 36 100.0 30 .................................... AAAAGAGGTTCGGTCGAATACAGATTATTA 8088 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 8022 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7956 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7890 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7824 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7758 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7692 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7626 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7559 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7493 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7427 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7361 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7295 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7229 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7163 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 7097 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 7031 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6965 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6899 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6833 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6767 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6701 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6635 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6569 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6503 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6437 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6371 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6305 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6239 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6173 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6107 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 6041 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5975 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5909 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5843 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5777 36 100.0 30 .................................... TTAAATAACATATAAATAAAGAGAGCCTCC 5711 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5645 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5579 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5513 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5447 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5412,5415,5420] ========== ====== ====== ====== ==================================== =============================== ================== 58 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //