Array 1 29-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000116.1 Chromobacterium vaccinii strain MWU328 contig00116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29 29 100.0 32 ............................. CGCTGGCCGATGCCACCATGCGCCGCATCGCC 90 29 100.0 32 ............................. GTACAGCCCATTGCTGTCGCTCAGCTTGAACT 151 29 100.0 33 ............................. GAGAGTTCGCGCCAGCTCCGGGTGGAGCAGCAA 213 29 93.1 33 ..........................G.C GTACGCCACCACCATGGGCGGCCTGGTTGGCAA 275 29 100.0 32 ............................. CTGGCGGCGGCGTTCGTCACCTGGGAAAAGGT 336 29 100.0 31 ............................. GCACCGTGCCAACGCAGGTTTTGCCGGATAC 396 29 100.0 32 ............................. CGCAACGCGAGCGGCCTGTTGACGGTCGGATA 457 29 100.0 33 ............................. CCGCCAACGCCCAGCGTTCTGATGACATCGAAA 519 29 100.0 32 ............................. CGAAGACCGACACTCCAGCAACTGGAGGCCAG 580 29 100.0 0 ............................. | G [597] ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CACAACCGATGCGCCTGTGGGGTCAGGAC # Right flank : GCGGCGCGGATGGAGGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000038.1 Chromobacterium vaccinii strain MWU328 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 28 96.6 32 .................-........... CGCGTGGTCAGGCTCTTGGATGGCCGGGGTAG 62 29 100.0 32 ............................. GTGGCGAACCGCAACGCGGCGCCGAAGCGCCA 123 29 100.0 32 ............................. TCGAGTTTATTCACGCCGCCACCTCGCGCGCC 184 29 100.0 32 ............................. CAGGCCCTGGCCGGCGCAACGCCGGAGCAGAT 245 29 100.0 32 ............................. ACCAAAACGCCATGGCGCAGGAGATAGCCAAT 306 29 100.0 32 ............................. CCCCAGCCGTTGCCGACACCGGCGGCGTCCAG 367 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : GC # Right flank : GTGATGGGATGGGGTTGGGATTGCTTGAAAGAGCTATTTCCACTCCCGCAGGGATGCGCTGTTATCTTGCAATCCGTCTATGTCTTTCACGCGGGAAGCCGTTTGCCATTCAATTCCGTTCCCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTAGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTTTGGCTGGGCAGCGGGGTGACTTTTTCCGCGCTGCTGATCTCTCCCCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGATGATCTGGGGCATGGCGGCGCATGGCCTGAATCCGGTGGGCGCGGCGGCTTTCGCCAGCATCGAGGCGGTCAGCGGCGCAATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGACAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 26649-28694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000051.1 Chromobacterium vaccinii strain MWU328 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 26649 29 100.0 32 ............................. GCCAAAACCAAGCCGATCCTTCATCGCAACCT 26710 29 100.0 32 ............................. GGCCGCCCAACAAAGCAAATGCCGAGTCAATA 26771 29 100.0 32 ............................. CAACCCGCCGGCACCTACTGGCGCGTGCTCAG 26832 29 100.0 32 ............................. CGGACGCTGCGCAGCGTCAGCCGCGGCACGGC 26893 29 100.0 32 ............................. CGTCGGGGAGCAATCTGATGCGCACCTCACGT 26954 29 100.0 32 ............................. CGCGCTCTACCTGCTGCCGCTTCTCGGTGTGG 27015 29 96.6 32 ............................C GGCGCATATTGCCCCATGTTTCGATCATTTCC 27076 29 100.0 32 ............................. CAGTTTGAACACGACAGCCGAATCAAGTTTTT 27137 29 100.0 32 ............................. GCGAGCGATACATACCGCCCGGGCCGCGACGA 27198 29 100.0 32 ............................. GACGCGAAGTCATTCCGATGCATCGTGGCTGC 27259 29 100.0 32 ............................. AAGAAAAGGCCACCTATTTGGTAGCTGGTGAT 27320 29 100.0 32 ............................. GCCCGTGGCTACCCAACAGGAGACGTCAGCAT 27381 29 100.0 32 ............................. ATCTTTGTCCATTGTTCACTCCGCAACGTCAG 27442 29 100.0 32 ............................. TTCACGATTGTTTTCTCCTTCTCTCTCTGGAT 27503 29 100.0 32 ............................. CCACGCGAGGTAGGGCGAGTACTGCGTGCCAG 27564 29 100.0 32 ............................. TGGTTGATCGGCCTTGGATCGGGCGGCACGCA 27625 29 100.0 32 ............................. GTCTGGGCCGAGGAGATCGGCATGACCGGCAT 27686 29 100.0 32 ............................. AAACGGTTTCATCCCCTCACCCTCCCCCATCC 27747 29 100.0 33 ............................. CGCAGGGCCAGTATGGGACCGCGCCGGGCGGTG 27809 29 100.0 32 ............................. CACGCGCTGGCAGAACGGCGGCAGCGTCTGCT 27870 29 100.0 32 ............................. GATTGGAAATGAACAAGGTGCGTGAAGAGTTT 27931 29 100.0 32 ............................. CTGGACGGCACCGTCGCCGCCAAAGGCGAGCG 27992 29 100.0 32 ............................. TAGTCGCGCAGTTCTGCGTTCATGATTACTCC 28053 29 100.0 33 ............................. GTTTGGCCGGCACCCATACCGGCTTGGCCAGCC 28115 29 100.0 32 ............................. AACAAACGATGGCAATCAAGCTCAGAGGTAAC 28176 29 100.0 32 ............................. TCAGCAATGGTGCTATCAGCTTGAGCTTTTGC 28237 29 100.0 32 ............................. GCGAGCGAACCACTCCGCCATGCGCGGATTCT 28298 29 100.0 32 ............................. CTTTTCCCGCAATTCCAATTGAGGAACCAACT 28359 29 100.0 32 ............................. CGCGATGGCCTGGGCATCGTAGTCTTGTTGCA 28420 29 100.0 34 ............................. TGCCGCAGTTGCTCAATCAGGGTGTGCTGGTCGT 28483 29 100.0 32 ............................. GCATGCAATCTCCGCAGCTGCAGTCTGTCGGG 28544 29 96.6 32 ...........................T. CGGTACTCGGGTTACGAGACGCTGAACATCTC 28605 29 93.1 32 .C..........T................ GTGCGCGACTACGTCGGCATCATCGACAAGTT 28666 29 75.9 0 ................C..A..C..TTTT | ========== ====== ====== ====== ============================= ================================== ================== 34 29 98.9 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTAAGCGGCTTGCCCGGACCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGACCGGCATGAAAAAAGCGCCAGCCAGGCGCTTTTTGCTTGCATGTCATTGGAATGTCGTTAGTCTATGGCGTCTGGCCGAGCCAAAGCCGGGCTGTTGAGAGGCCTTGCGCCCAGGCTCTGAGGCTAGCGCGCGGCCCGCTTGGAGAGGGACAATTTCCCAAGGCCGCGCGGTGGTTTGCAGGGGGATTTGAACGGCGTTTTATGGCCGGAAAAATCGGTAGAATTTCAGAGTGGGTTTTTATCTTTAAAAATCAGTAGTTTGAAAATGGT # Right flank : TTCGATTAGCAGTTGGCGCATAGGGGAGCGTGGCCCATATCCGCTTCTGTCTGCCAGCCCCAAGCCCGAAAACAAAAAAGCGCCCCGTGGGGCGCTTTTCTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAATCCTTGCGATCCAGCACCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36001-36456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000051.1 Chromobacterium vaccinii strain MWU328 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36001 29 100.0 32 ............................. CTCGTCACCGATGCGCAGCAGTTCATGCCACT 36062 29 100.0 32 ............................. ATATTGTGTTTGCATGAATGCCAGCCGCATAC 36123 29 100.0 32 ............................. GTTTATGGCTGGTATAAATCGGCAGAAGCTCA 36184 29 100.0 32 ............................. CCGCGCAAGGCCAAATTCGGCTATCAGCGAGG 36245 29 100.0 32 ............................. CTCTGCTTGCATCTTCTCTTCAAGAATCAAGG 36306 29 100.0 32 ............................. CGGATTGTTTGCTGGCCAGCAGAGATGCCACC 36367 29 100.0 32 ............................. AACGTTCATTGTCGGGAAAGTCGCTCTTGATA 36428 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGTCTGCCGCAGCTGCAATGCGCCGACCGTGTCTTCCGTCCGCTGCACGAGCGGCTGGCCACTCAGGCGCTGACCGGTTTCGAGTGGCTCAATCCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCGGCGGAACCTGCCGTCTATGGCAAGCAAACCTTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCAGGCCAGCCGCCCAGGCTGCTGCGGGTGGCCGATTGCGCGGGCAAGTGAGTCGCTGGGATAATGCCGATGTCGTTTTGCTGGCCATGGCACGGTAGTCTTCCATGGCTGGCAGGCGGTATTGCCGGGTGATTCAGCTGATTATTTTTTGGGCGGGAAAATCGGTAGATTTTTAGAGTGAGTTTTTATCTTTAAAAATCAAAATGTTGAGATTGGT # Right flank : CGGGGGCTGCTGTCCTTCGGCTATGACCACAGGTGTTCCCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 599-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000076.1 Chromobacterium vaccinii strain MWU328 contig00076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 598 29 100.0 32 ............................. GCGCGGCACGTTATCGACATGCTCATTGAATT 537 29 100.0 32 ............................. CTGCCCAGGCGCAGCATCGGGATTAGACCTGA 476 29 100.0 32 ............................. ACCGTACTGGATGCGCTGAACGAACATCGCGA 415 29 100.0 32 ............................. GTTCAGCCGTATGGCCTGCCGAACCCCGCGCG 354 29 100.0 32 ............................. CACGCGCCGCCGATGCGCAGCATTGCGCCGCT 293 29 100.0 33 ............................. CCCCAGCCGTTGCCGACACCGGCGGCGTCCAAC 231 29 100.0 32 ............................. CCTGAGGTTGGCACCTCGGGCTTTTTGCGTTC 170 29 100.0 32 ............................. ACCTGAACACGCTCACGGCCTCGATCTCTCAT 109 29 100.0 32 ............................. CGAGACGATGTGCTTGCCGTCCATGGTCTTGA 48 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACGATGCTGAACGCCGGCGGTTTGGACAAACCGGAGGAGCAGGGCGTGGTGGGCGCGGCGTTTCCGGAAGACGAGGGACTGGGCGATGCTGGTCATCGTGCTTGAGAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTTGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATCCGCGACTACCTGTGGCAGCAGGTGGAGGAGGGGTTGGAAGACGGCAACGCGGTGATGGCTTGGCAAGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATACCGGCCGAGTTCGACGGCGCGAAGTTGGTGTCTTTTCTGCCGCCTCCGGTACCGGAAGAGACCCGTGAATAGCATGTGGATCGCTTTGCTTCAGGGGGCGATTTGGCTCTTCGAAAATCGGTAGATTTTTAGGTGGTGTTTTTATTTTGCAAAATCAATTGCTTGCGATTGGT # Right flank : GCTGGCGCAGAGCATCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11633-11177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZJJ01000076.1 Chromobacterium vaccinii strain MWU328 contig00076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11632 29 100.0 31 ............................. GCGAGACTTGCCCTTGCGCTTGAAATCGTTT 11572 28 96.6 31 .....-....................... GCCTGAATGGCGATATCCACCTTGTCGATGG 11512 28 96.6 32 .....-....................... GTGCGCGGAGACATCCCCCTGCCAGGTTTCAC 11452 29 100.0 31 ............................. CGAGCCGCTGTTGAGGGCGGCAGCAACATCA 11391 29 100.0 32 ............................. GCGGCAGAAGAAGCTGCTGCTCTCGCTCGTCA 11330 29 100.0 32 ............................. ACGCGCTCTACGCCCAGGGCCGCACCAAGCCC 11269 29 96.6 32 ...............A............. TGTTCCGGCAACTGTTGGGCCATCTCCAAATA 11208 29 86.2 0 .C.........A..C........C..... | TT,C [11181,11184] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : CCTGCTG # Right flank : CTATATCAGTCGTTCAAGAGTTCTCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGATCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGAAATGATGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCTGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGGCCGATAGATGGCGAGGATGGCATTCTGATGCAGCTTCGCCGATTCATGCTGGAGCTGGAGACGGCCCATCGGGAACTGGTCATTCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //