Array 1 2683-2898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000001.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2683 30 93.3 31 ...........T.................G TCCGGATCACGGCGGCGGGCCGCCGCCGGGC 2744 30 96.7 31 ...C.......................... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 2805 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCGGTAGCCCGTCGC 2866 30 83.3 0 ..A.........TG..G.....G....... | GT,G [2877,2894] ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGACAAAATCCCACCCCACCTCCCCACGACGACAGAAGCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACTCACGACGGCGACCCCACCACCCCCACTCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCTGCCCCACGGCTCCCGGTTGGGCAGGGCAGAAACGCCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGACAGAATGAGCATCAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAG # Right flank : CGAGCGGCCCGGGGTCCACTTGGCCCTGACACTGCGCGCCTGCTGTTCGCGCGACCCTCCCCCGGCCCGCAGGCATCTGCCGCCTGCCGAACGGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGACCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGCGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCAAATGCGGTCATGCGTACGGATAGAATCGCCCGACCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGACGAT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67854-66910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000031.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig34.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 67853 30 93.3 31 .......T.....................G ATGCGTTGCTCGGTGACGACGCGGTTCGTCG 67792 30 93.3 32 .......T.....................G ACCCCGACGACACCCTCACCAACCAGAGAGAC 67730 30 96.7 31 .............................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 67669 30 100.0 31 .............................. GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 67608 30 96.7 31 .........................C.... CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 67547 30 96.7 31 .............................T GCGACACGGGGCTCCCGGCCGCCGACCCGGA 67486 30 100.0 28 .............................. AGCGGGCGCACTTCGAGCAGCGCGACTA 67428 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 67367 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 67306 30 96.7 31 .............................A CCGGGATGATCATCCCGAGGATTTCCGGGAG 67245 30 96.7 31 .............................G GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 67184 30 96.7 31 .............................G GGTCGAGCGGGACCGCCAGCTCACGGCGATG 67123 30 100.0 31 .............................. ACTTCATGACCTCGCGGACGGTGGCGCCCTC 67062 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 67001 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGACGGT 66940 30 80.0 0 ...........C.GG...C..C.......A | T [66925] ========== ====== ====== ====== ============================== ================================ ================== 16 30 95.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGCGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGTGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACATACTCCACCGCCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72327-71138 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000031.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig34.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 72326 30 100.0 31 .............................. AGGGGTGGGGCGACGCAGCGTGACCCCCGCT 72265 30 100.0 31 .............................. CTCGGGCAGGGACGACACGTGCATAGCGATG 72204 30 100.0 31 .............................. GGTACATCACCGTCACCGCGGCCGGCCTCTG 72143 30 96.7 31 .............................G TCTGGCTGATCTCCCCGGTCATGTCGCCGTT 72082 30 100.0 31 .............................. GGATCCGCACCAGCATCACCGTGCAGATCCA 72021 30 96.7 31 .............................G CGGCGGGTACCGGACGGCGGCGGCGGAGGAG 71960 30 100.0 31 .............................. CGAGCAGCCCGTATGCCCCGTGGGTGCGGCG 71899 30 93.3 31 ............................AG ACTCGGCCGTTGCGAAAGCCGGAAAGTAAAT 71838 30 96.7 31 .............................G GCCTACACAGCTACATGGCGGGTCACGAGGA 71777 30 96.7 31 .............................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 71716 30 93.3 31 ...........G.................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 71655 30 96.7 31 ...........G.................. AGCTGGCCCGGCCGGCACGAGCCGATGGTTG 71594 30 93.3 32 .T.........G.................. CTTGCTCCAGCTCACCACCGCAGACGACTTCG 71532 30 90.0 31 .T.........G................A. CCCGGACCCGGAGGTGGCGCCCGTCCCGTAG 71471 30 90.0 31 .T.........G.................T GAATGGACACTGCCTACACACCCCCGGCGCG 71410 30 86.7 31 .T......T..G.................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 71349 30 90.0 31 .T.........G.................G TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 71288 30 83.3 31 .T.........G.......A........TG ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 71227 30 86.7 31 .T.........G......A..........G CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 71166 29 86.7 0 .T.........G.............-...A | ========== ====== ====== ====== ============================== ================================ ================== 20 30 93.8 31 GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCACGCACGCCCGACACAACAGATCACGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 77193-76616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000031.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig34.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77192 29 100.0 32 ............................. TGCGGGATCGGGATACTCTGTTTGGACACGAT 77131 29 100.0 32 ............................. CATCTACGAAGGCCGCGGATGGGACCGCCAGG 77070 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 77009 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 76948 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 76887 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 76825 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 76764 29 100.0 32 ............................. GGAATTGCCACTCGTATGCTCGTGGATTACGA 76703 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 76642 27 82.8 0 ............--.A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGCGGTGCCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCTGGCCGATCCTGGCGACCCGGGGGGCGACGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGCACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAGGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : TCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16040-15888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000062.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig62.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16039 30 96.7 31 .............................G ACACCGAGCTACGCAAGAGCATCACGACGCA 15978 30 100.0 31 .............................. ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 15917 30 93.3 0 .CA........................... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCACCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGTCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTAACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGA # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19657-19444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000062.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig62.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19656 30 100.0 31 .............................. CCGCGCGCCTGCATCCGAAGACGGCTGAGCG 19595 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 19534 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 19473 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGCCCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACGTGTGACCACCTTGCCCCGGAGAGCGAGATATGCAGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAAACCGCAGGTCACGAACA # Right flank : GGTCCTGCCAGTCGGTGGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCACGGGGGCGAAGGTCCCTCTCGTGGAAGTCCGTGGAGGCCGGGTCGGATCGTGCGAAGTCCCGCCCGCACGCGCACAGGGGCGTGGCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8089-7938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000063.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig63.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8088 29 96.6 32 .........................T... CTGCACCGTCGCCAGGCGAGCGCGCAGGACGA 8027 29 100.0 32 ............................. GAGCGCGCGGTATCGTAACAGGGCTCGGCCGA 7966 29 89.7 0 ........C................T..G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGGTCCCTGCGCACGCGGGGGTGGCCCC # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGTCCAAGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGTGGCCCGGGAGTTGAGCGCGGCCAGCAAGGGCGGCCCGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAAGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : TCGAGCGACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGCCCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCTGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13781-13374 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUZ01000063.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2929 B2929contig63.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 13780 30 93.3 31 ............................CG TCACCCGGCCGGGAAGCGCGGTGATGAACCT 13719 30 100.0 31 .............................. CGGGGATGCCGTATACGGATATCTCGCGGGC 13658 30 93.3 31 ............................CA CCTGCTGGATGCGGGCCCGCAGCTCGGGCAC 13597 30 96.7 31 ............................C. CGGCGACGGTGCGCCCCTGGTGGTTGGTCAC 13536 30 90.0 42 ................T...........CG GGTTCGCCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 13464 30 100.0 31 .............................. CTCCGTGGCAACCTGACCCCACTCACGGCCT 13403 30 86.7 0 ...........T...A.........C..C. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 94.3 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Left flank : CACCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACAAAGCCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGAGCCAACCGCACCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCTGCCCCAAGAACCCCCGTTAGGCAGGACGGACACACCGCATCCCCAGCACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACAGAAGGCGATATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCGA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //