Array 1 537260-537441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVU02000006.1 Metabacillus indicus LMG 22858 contig006, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================= ================== 537260 32 100.0 41 ................................ CTGAGCATAAAGAAGGTGCAATCTGTTTGGCGGATTGTGTT 537333 32 100.0 45 ................................ TAAAAAACCTCGTGTGACAATGGTACTGGATAGAGTGGATGTGTT 537410 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================= ================== 3 32 100.0 44 AATCCTCTAAACGAGGCTATTAGTATTTCTAC # Left flank : AGTTTCAACATAACAATTCCAGCTACAAGTAAGAGAGCAAATACAGCGGGTTCTAAGAAAAAGACTATAGGTAAGAGAATGATGATGGCTAGTATTATAGTTATCTCTTTTTTCATGCTAAACACTCCTTCCTGATTTTTATTTTTGACCATTCACCTTCATAATTTTACCATTAAGTTTAGTAGGTTTTGTATTTAAGCAATTAATTTTGTAGAAATGTTTCCATAGAAAAGAGCCCACCACCATCGAGGTAACGGTGCACACGCTAGAATAAACTTAACAGTTTTTGCTTAATTTGATTTTACACTGTTTTTTTACATCCTATTAACATAAAAATAAGCACGAGAACCGTCTCGGTGCTTCCCTCCCCTCTTCCTTTCAAAACAAAAAAAATGACCCACCTCCTTGAATTGAGATGAGCCTAATTAGTCGTTTTTCTTCTATTATTCAATTTACGATAAACAATTTTTGGGAGCATTAGAACCGTCCCGGTGCTTCCG # Right flank : CTGCACCCCTATCTTACCCCTTGTGCCACAAGGGTTTCAAGACCTATTTTTGCACACCTATTTAATCAGAGAAAGTCAAACAGTGACGAAATTAAATTCCGAATATTCACAACTTTAATTTACCCCAATATCCTTCACATTACTTACATTATCATTTTTTCGACCTTATGCACGGTCCCCCCTTTTTTCGGATCAATTTAGACCGTGCAAGTTTTGCAGCTGCTTCATCTTCTCTAGGTCGGTAGTTAAATTCTGTACCTACAACTATTTTATTTGATTAGTAACTTTCAGAAGCTCATAAATCCTCAATGAATCATTGAGTGTTACCCACTTTCTTGGCACCAAAATTTATTTATGAACAGCTTTCTTAATTAAGTATGCCTCAAACACGCTTCTCACACAAATACTAAGTGCATCAGATTTTAGACAATAAATTAGTCAAATTTGGGACAAATAACACCGTCGATCTCCGGACAGTTTAGACTTGTATTAACAGTAAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCTAAACGAGGCTATTAGTATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 543485-543299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVU02000006.1 Metabacillus indicus LMG 22858 contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 543484 36 100.0 37 .................................... CATCCACTTTTCAGGTTTTTCTGTGCGATCGAACAAT 543411 36 100.0 41 .................................... CACCATCATATCACTGATATCCTGCTCAGTTACCTCCCTAA 543334 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 100.0 40 GTAGAAATACCAATAGCCTCGTTTAGAGGATTAACA # Left flank : TTCTCATGCTTCTTTTTACATTGATGGACTTTTTAAAGTGGAAATTCTCTAGAAGGATTACTGTGAACAAGTCTAAACTGTCCGGAGATCGACGGTGTTATTTGTCTCTAATTTGACGAGTTTACTGTCTGAAATCTGAAGTGCGTGGTGTTTGTGTGAGAAGCGTGTTTGAGACATACTTAATTAAGGATGATGTTTAAGAATAATCTTTGGTGCCAAGGAGTGGGTAGCACTCAATGATTCATCGAGGATTTATGAGCTTTTTAAAAGTTCCTAAAGCAGCTGCAAACCTTGCGCGGTCCAAATCGGTCTGAAAAAAGGGGGGACCGTGTATAAGGCTGAAAAAATGATAATGTAAGTAATGTGAAGGATATTGGGGTAAATTAAAGTTGTGAATATTAAGAATTTAATTTCGTCAGTGTTTGACCTTCTCTGATTAAATAGGTGTGCAAAAATAGGTCTTGAAACCCTTGTGGCACAAGGGGTAAGATAGGGGTGCA # Right flank : TATTTTCCATGATTTGTCAACCTGGTCTATTTTCCCTTGATTTTAATGGTTTGAAATTTCCAATATCTTAAAATGCAGCTGGCTTAGCCGGCTTTTTTGTTTGACCAGCATTGGCGCACTCTTTGGAAGCGCCGGGACGGTTCTAATGCTTCCCGGAATCTCAAAATATGATTTGTCAACAGCGGTCTATTTTCCCCTGATTTTAGCGGTCTGAAATTTCCAATATCTTAAAATGCAGCTGGCTTAATGCCGGCTGTTTGGTTTGACCAGCATTGGCGCACTCTTGAAGCATCGGGATGGTTCTCATGCTTCTTTTTACATCTGATGGACTTGTTAAAGAGGAAATTCTTTAGAAGGATTACTGTGAATACAACTCTAAACTGTCCGGAGATAAGTGTTATTTGTCCCTAATTTGACGAGTTTACTGTCTGAAATCTGAAATGCGTGGTGTTTGTGTGAGAAGCGTGTTTAGACATACTTAATATAGGGTGATGTTCAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACCAATAGCCTCGTTTAGAGGATTAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 544460-544196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVU02000006.1 Metabacillus indicus LMG 22858 contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 544459 39 100.0 35 ....................................... TTATACTTTGTAAGCATATCCTCGGAATCAGAAGG 544385 39 97.4 36 .....................T................. TTTGTAGTACCTGCCATAATTCCTAACAGATACAAT 544310 39 100.0 37 ....................................... CACAGAATCAAAACTTGTCATCTTAATCAACTTCCTT 544234 39 76.9 0 ..........C..A.AT.................GGAAG | ========== ====== ====== ====== ======================================= ===================================== ================== 4 39 93.6 36 GTAGAAATACTAATAGCCTCGCTTAGAGGATTAACACTT # Left flank : AAGGGCTTAACTATAAGAAAACTGAGTGGGATAAGATTATCCATGAAAGGTATAAGATCATTGACGATAAGTATCGGAAGAGCTGACGTGGAAGCACCGGGAGGGTTCTCGTGCTTCTTCAAACACTGTCTGAAATCTGAAGTGGGTGGTGTTTGTGTAGAAGCGTGTTTGAGGGATACTTAATTAAGGAAGATGTTCAAGAAACAATCTCTGGTGCCAAGGAGTGTGTAGCATTCAATGATTCATTGAGGATTTATGAGCTTTCAAAAAATTCCTAAAGCAGCTGCAAACCTTGCACGGTCCAAATTGGTCTGAAAAAGGGGGGACCGTGTATGAGGCTGAGAAAAAGATATTGAAAGTAATAAGAAGTATATTGAAGTAAATTAAAGTTGTGAATATTCAGAATTAAATTCCGTCAGTGTTTGACCTTCTCTGATTAAATAGGCGTGCAAAAATAGGTCTTGAAACCCTTGTGGCACAAGGGGTAAGATAGGGGTGCA # Right flank : CATATTGCTTTAAATGCAGCTGGCTTGAAGCACCGGAAGCGCTGGGGAGGTTCTAATGCTTCCCAGAATCTCAAAATATGATTTGTAAACAGCGGTCTATTTTCCCCTGATTTTAGCGGTCTGAAATTTCCAATATCTTAAAATGCAGCTGGCTTAATGCCGGCGTTTTTGGTTTGACCAGCATTGGCGCACTATTGAAGCATCGGGATGGTTCTCATGCTTCTTTTTACATTGATGGACTTTTTAAAGTGGAAATTCTCTAGAAGGATTACTGTGAACAAGTCTAAACTGTCCGGAGATCGACGGTGTTATTTGTCTCTAATTTGACGAGTTTACTGTCTGAAATCTGAAGTGCGTGGTGTTTGTGTGAGAAGCGTGTTTGAGACATACTTAATTAAGGATGATGTTTAAGAATAATCTTTGGTGCCAAGGAGTGGGTAGCACTCAATGATTCATCGAGGATTTATGAGCTTTTTAAAAGTTCCTAAAGCAGCTGCAAA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACTAATAGCCTCGCTTAGAGGATTAACACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 546316-545894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGVU02000006.1 Metabacillus indicus LMG 22858 contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 546315 37 100.0 36 ..................................... TTTATATATTTTTTCGTTTATCACGCCTCAATTAAA 546242 37 100.0 37 ..................................... AATTGAGAATTCCATAGCATCGCTGTGTAAAGCAGGT 546168 37 100.0 38 ..................................... AAAATGTCGAGTTTTGGATGGCTTCCAGTTGAGCTTCG 546093 37 100.0 38 ..................................... AATATTCATAAGATCGCTCCTATTCTTGGTTTGTTTTA 546018 37 100.0 52 ..................................... ATATTTAGTTACTAGAATTTCCTTGGTTGTTTTTAGTAGAAATACCAATAGC 545929 36 75.7 0 C.C....A.A-..........CA...........A.G | ========== ====== ====== ====== ===================================== ==================================================== ================== 6 37 96.0 40 GTAGAAATACTAATAGCCTCGTTTAGAGGATTAACAC # Left flank : GACTATAACTATCAATATTCAATGAAAGTATTACACTTGGAGTCTGCTTATCGGGAAATCGGACAAGCCGAAAAAGAAATACGCAACAGACTCAATGCAGAACTATCGAAAGGGCCTAAGTTTTAGCATGTGTAAAAGACCGGGTTCTCTTTGGGATACTTAATTAAGAAAGAAGTTCTAGAAATGACTTCTGGTGACAAGGAGTGGGTAGCACTCAAATAAAATAGTTGTCGGTACAGTATTTAACTGCCAACCTACAGAAGATGTAATTATATAAAGCAGCTGCAAACCTTGCACGGTCCAAATCGGTCTAAGAAAAAGGGGGACCGTGCATAAGGCTGAAAAAATGATAACGTAAGTTTTAAAGAGAATATTGAAGTAAAATGAAGTTGTGAATATTCCGAACCAAATTTACTCAGTGTTTGACCTTCTCTGAATAAATAGGCGTGGAAAAATAGGTTTTGAAACCCTTGTGGCATAAGGGGTAAGATAGGAGTGCA # Right flank : GGAAGCGCGTGGCAGTCTTGATGCTTCCCAAAATTACAAAACATGATTTGTCAACAGCGGCCTATTTTCCCTTGATTTTAGCGGTCTGAAATTTCCTATATCTTAAAATGCAGCTGGCTTAATGCCGGCTTTTTGGTTTGAGCAGAATTTGCGAACTATAGAAGCAAAGACTTTCATATTAAAATGAGGAAGCATCGGGACAGTATCCGTGCTACTATATTTCTAATGAAGAAGCAGCAGAACCGTCCAGCGCTTTTGCTTTTAATAAAAGGAGATTGATTCAAATTGAAATCATACATTGTCCGAATAGAATTAGAAGAGTCCAATCCCTTAATATGGAGAAAAGTCATCATGCCAGCAGGAGCGACATATAAAAGGCTTCATGATATCATCCAGAACGTGACCAATTTTCAGAGTGGCTACCCTAATGAAGGTTATCACCTCTTTGAATTTGACCTGGCTGAGGATAATAAAATTGTCACAGATAATGAAGAAGCTTA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACTAATAGCCTCGTTTAGAGGATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //