Array 1 5956-6137 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801791.1 Rothia sp. HMSC075F09 Scaffold176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 5956 36 100.0 38 .................................... GGGTGTAACAGAATCTAGTGGAGGTCTTGCTATCGGAG 6030 36 100.0 36 .................................... CGCGAATAAGCTAGAGGCCGCACACATCTCAAATGT 6102 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCTCAACTGCGTTCGGGTTCGTGCCCAAGGTGAGCCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTCATGCGGCCAGCGCATTTCTCGTCCCAGAGTCTTAGATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGAATTTGAGCCGAAAGGGTCGCGCACTGAAGTTTGC # Right flank : GATTTGGGTGAGGTGGATGTGAACTCCGGGGTTGTATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGACCATCAATAATACGCGCAACCGCCACACCCGGCACGAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAGGCTGCTGATAATTGGCGCGAGTTTTTCCGTCAGCGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTGATTTGCTGTTCGGTGCCGCCGGTCGGCTGCAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCAAAATTCGCGGGTGTTCGCCGTGCGGTTGTAAATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 6369-6547 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801791.1 Rothia sp. HMSC075F09 Scaffold176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 6369 36 100.0 37 .................................... AGGCTGCTGATAATTGGCGCGAGTTTTTCCGTCAGCG 6442 36 100.0 34 .................................... CTGATTTGCTGTTCGGTGCCGCCGGTCGGCTGCA 6512 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGAATTTGAGCCGAAAGGGTCGCGCACTGAAGTTTGCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGGGTGTAACAGAATCTAGTGGAGGTCTTGCTATCGGAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGCGAATAAGCTAGAGGCCGCACACATCTCAAATGTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGATTTGGGTGAGGTGGATGTGAACTCCGGGGTTGTATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGACCATCAATAATACGCGCAACCGCCACACCCGGCACGA # Right flank : GCAAAATTCGCGGGTGTTCGCCGTGCGGTTGTAAATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCTGAGCCGTCAAGCCCAGCTCACGGCGCAAACGGCGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCTGCGGCAAACCTCCATGCTCACCACCGACACCACCCACATTTCCCTTCCTTTTTGGGGAGGGGCTTTCATTGAGGCAACGGGGAAACGATTTCAGCTTGGATGCCTGTCCGCATTTCCCCTTCCTTTTTGGAGGGCTTTCATTGAGGCGGTGTTCGGCGCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 11822-12145 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801791.1 Rothia sp. HMSC075F09 Scaffold176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 11822 36 97.2 36 .......T............................ GCTATCCAGGACGTCGATACGATGGTCGAGGTTTAC 11894 36 100.0 34 .................................... TTGAAGGTGAGCCCCACAGTAACGGGCGTGTACC 11964 36 100.0 37 .................................... TCAGACGGAGACTGGGCGCGCCGCGTGGGAATCGTTG 12037 36 97.2 37 .................T.................. AGGAGAGTGAGGTCAATGAGGCGGTCCACCTGGCGCA 12110 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 98.3 36 ATTTCCCCGCCTTCGGGCGGGGACTTTCATTGAGGC # Left flank : TGGGGACTTTCATTGAGGCACCCTGGGAATCCTCAGCCTGGAAGAGCTACATGACATTTCCCCGATTTCGGGCGGGGACTTTTAGTGAGGCGTCGCCGGTTGGTCTGCACAAGATGTGTCGGTGCTGGATTTCCTTTCCTTTTCGGAGGGGCTTTCATTGAGGCTGGCGAACGTTCGTCGTGACTCCCTGGTGTATCGGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCCGGGTAGGCATAGCCAGAAGCTCCTGCGCAATCTGCAATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCAATGAAAGCCCCGCTCCAGATGGAGCAGGGAATAACAATTTCCCCGCCTTCGGGTGGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGAAGCTCCTGCGCAATCTGCA # Right flank : CACGGATGAACCGCCTCTCGGGTGGTCATCAAGACTGATTTCCCCGCCTTCGGGTGGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTCGCCGTGTAGGAACTGTGCCGCTACAGCCGCGATATTTCTCCACCTTCGGATGACGATGCTGCGGTATGCATAGATATTGCGTGATGTACACTTTGGGTACGTAATCCGCGAGACTCTCGCACCACAGCCGTTTTGGTTATGCCATAACATGCTAGTTTTGCTAGCTATTTCCCCGCTTTCAGGTGGGGACTTTCATTGAGGCATGGTGTTCAAGAATGGCTTTACCATCCCTAAGGCCATTACTCCGCCTTCGGGCGGGGAACCTTCATTGCGATTCCGAGCATGAATCGGGAAGTCTC # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCGCCTTCGGGCGGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.40,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //