Array 1 283010-285441 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJJ01000003.1 Akkermansia muciniphila strain BIOML-A15 scaffold3_size381625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 283010 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 283075 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 283140 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 283204 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 283269 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 283333 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 283397 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 283463 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 283528 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 283593 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 283657 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 283722 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 283787 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 283852 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 283917 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 283982 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 284047 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 284111 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 284176 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 284241 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 284306 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 284371 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 284436 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 284501 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 284566 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 284631 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 284696 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 284761 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 284826 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 284891 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 284956 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 285021 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 285086 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 285151 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 285216 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 285281 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 285346 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 285411 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 115160-119680 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJJ01000002.1 Akkermansia muciniphila strain BIOML-A15 scaffold2_size500730, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 115160 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 115227 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 115294 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 115361 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 115428 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 115495 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 115562 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 115629 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 115696 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 115763 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 115830 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 115897 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 115964 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 116031 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 116097 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 116164 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 116231 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 116298 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 116365 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 116432 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 116499 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 116566 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 116633 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 116699 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 116766 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 116833 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 116900 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 116968 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 117035 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 117102 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 117170 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 117235 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 117303 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 117369 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 117435 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 117502 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 117569 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 117636 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 117703 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 117770 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 117836 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 117903 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 117970 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 118037 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 118104 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 118171 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 118238 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 118305 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 118372 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 118439 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 118507 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 118574 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 118642 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 118708 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 118775 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 118843 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 118910 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 118977 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 119044 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 119112 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 119179 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 119245 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 119312 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 119379 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 119446 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 119512 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 119579 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [119598] 119648 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //