Array 1 2054630-2055379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007212.1 Burkholderia plantarii strain ATCC 43733 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2054630 28 100.0 32 ............................ TTCTTGCGCCGGGCCTGTGGCTTGCGCGGTGC 2054690 28 100.0 32 ............................ GTAACGATCGTCGTTGCCCTTGATGAACTGAT 2054750 28 100.0 32 ............................ TTCATGATGAAGTCGTTGTAGCTGGGAAGGCC 2054810 28 100.0 32 ............................ ATCCTGCACCTCGCGCGCGAGCAGGGGTGGAT 2054870 28 100.0 32 ............................ GCTGACGGGCAGACATGAAGCCGATCCCGGGC 2054930 28 100.0 32 ............................ GCGATGGAGAATCGAAGCTGCATCCAATGGGA 2054990 28 100.0 32 ............................ GCGCTCGTGCTCGAGCTTCAGCACGAACGCAC 2055050 28 100.0 33 ............................ GTAACCCGCGCGCGGTCCATCCCTCAACGAACC 2055111 28 100.0 32 ............................ ATGTCGTACTTGGGAAAAGGGGACTGCTGTCT 2055171 28 100.0 32 ............................ TACCGGGCGAATTTCGGTCAGCGCGAGCTGAT 2055231 28 100.0 32 ............................ GACTGGCAATTCTGGCGCGATACGACGCGCGC 2055291 28 100.0 32 ............................ TTCCGCCACGTCCGGCTCGGGCGCGTCGAATT 2055351 28 82.1 0 .......A.....C.......GC.A... | T [2055377] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 GTTTGCTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGCAGCACTTCCGACGCGGTTTTCACCAGCGTGCGAAACGCGGCCGCGTCGAGGGGCTTCGGATTCTTCTTGTCGCGACCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATCGCGACAGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGTGCCGTCCAGCCGTTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGTTGTCGTCCCGGGCTGCGTCGGTGTCGGTGAGGTGGTCGGTCATGAGGCTTCGGCTTCGGTTCGGGGGCTTGGGTGGGCGCGTATTGTAAACGTTTCGATGGGCGGGAATGGGGCGGGGTGACGCGGGTGGTTGGGGTGGTGACCGGTGAACCCTTTTTTCGGCAGAATGCGCGAAGGGTTGGAAAATCAATGAGTTGGCGAGGGGGGGGAATTTGGGGTGGCGGAGCGGAGTGATGGGAATTCGTTGTTGAATCAAGGAATTAGGGGATTTTTTGTCCA # Right flank : ACAAAAAGACAACCAGACACATCCGGAATCCCCCGTGTGAGGCGGATTAAGAATCAGACCTCGACGTTGAATCGCTCCCGGGTAAAGCAGTGCAAACTGCGTCGTCGGACGTTTCCATTCGTGCCGGGAGCCGGCCCATTTCGCAACGACGTTGCGCAGGGCCAACCCAATCAGTTTGAGCGGGGCCTGCCCGAACCTTTCCACGCTTTTTCAGGGGATCAACATGACTCGGCAACTTTCATGGGCTGACGCAACGGTGCGCGACGAACTGGCGGCACTGCAACGCGCACAACCATTCGTCTACGGCCTGACCAACTACATCGCGGCCAACCTCAGTGCAAACGTGCTGCTGGCCGTGGGGGCCGCACCCGCGATTGGCGCCGCGCTGGACTGGCCGACCTGCTTCGCTGCCGCCGCAGCCGGGATGTGGGTCAACGGTGCCGCGCTGATCAGCAGCGCACCGGATACGCTCGAGACGGCCGCCCGGTCGGCACACGAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2065636-2066924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007212.1 Burkholderia plantarii strain ATCC 43733 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2065636 28 100.0 32 ............................ GTCGACGTCCGGCAACTCAGGGCCGAGTTCGC 2065696 28 100.0 33 ............................ CGAGATCGCTGCTCGCATGCTGGCCGAGCGCTG 2065757 28 100.0 32 ............................ ACCACGCCAGAATGCTCGGTGGAACGACAAGG 2065817 28 100.0 32 ............................ TCGTTGCGGATCATCGAGGAAGCAAATGCGCA 2065877 28 100.0 32 ............................ TGAGACCACACCATGAAGCCATATGTGTTCAG 2065937 28 100.0 32 ............................ ACGTCCAGCTGCTTCGCGGTGAGCCAGCCGGT 2065997 28 100.0 32 ............................ ATATTGGAGACGGTATTGGGGGTTCTCCAATA 2066057 28 100.0 32 ............................ AATGCGGCCGGACGACGAGACGGTCAAGGCCA 2066117 28 100.0 32 ............................ TGGCCGCCGGCATCGATCACGACGTGGTCATA 2066177 28 100.0 32 ............................ ACGCATGCGGCTGTATCTGGCGGCCGGCCGAC 2066237 28 100.0 33 ............................ TTCGTACTTGCGCTCCCACGCCATCTGACGCAT 2066298 28 100.0 32 ............................ TCGCAGATGTCGGGTGAATGGGTTGCTGCGCC 2066358 28 100.0 32 ............................ TATGAGGCTTGCAAGCGCATCCGCGAAGTGCT 2066418 28 100.0 32 ............................ TTCCAGTCCTGGCGCCCTTTGCGCTCTTCCTC 2066478 28 100.0 32 ............................ TAGATCCTGCATTCCTATTCACGTTCCTACGC 2066538 28 100.0 31 ............................ TCGATGCTCGCTACTTGATCGGTTGGATCGG 2066597 28 100.0 32 ............................ GAGCACCAGCAGATAAACGAAGCAGACGCCGA 2066657 28 100.0 32 ............................ CATGTCGAACCATTCTTCCGGGCCGCTCATGC 2066717 28 100.0 32 ............................ TTGCCGACGATCAGCCAGTAGTGGCTCGTCTT 2066777 28 100.0 32 ............................ TCGCCGGCCAGCCATGCCGCGTCACGCCCCTC 2066837 28 100.0 32 ............................ TTCAGCCACATTGCACGCCGCCACCCACGCAC 2066897 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGGGTTTGCGCGAACTGATGGCGCAGCCATGGTTGCAGGGGATGCGCGATCACGTTGTGGTGGCCGAAGCGGCGCCGGTGCCGGCGGGGGCGACGCACCGGGTTGTGCGGCGGCGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCGGCGCATATTCCCGATAGCGTCGAGCGGCGGCCGGATCTGCCTTATGTGCAATTGCGCAGCACGAGCACTGGGCAGGGGTTTTGCCTGTTTGTTGAGCAGGGGAATGAGGGGCGGGAGGCGGTAGCGGGAGCGTTCAACAGTTACGGGTTGAGTCAGGGCGCGACGGTGCCGTGGTTTTAACCCTTTTCCGTGGCCGGAAAAGGAGGCTTTAAAAATCAATGGGTTAGCGAGGAAGCGAAAATTTGGGTGTTTCGCTTCCTTGGCAGAGTTTTGCTTTTGGAAACATGGGGTTGGGTGGTTGGGAGGGTA # Right flank : AATATCGAATGGCCGATTCCAAAAACTTGGATGATGGACGCCACCTGCACTGGCTGACCTACAGCACCGGCTACGTGCATAGCCTGCAGTTGGGCATGGCAAGGCTGGCTGCGTGAACAAACCCTAATGCGCGCCAGCATCGTCGAAGCTGAGCTTGCGCGCGATCGTGAGCCCGGCCGGCGAGCTGAAATCGAGCCGCACCAGCCACACGCCCGGCATTTCGAGCGCGAGGCGGGCGTGGTAGACGCCCGGGTCCGCATCCGGCACGGCCGCCACCGGCGTCACGTTGTGCGCCATCGGCATCGACGGCATGTCGGCGCTCACCGTGAAGCGCGCGTCGCGCAGCGGCGCGCCGCCGGGCGCGGCGAGGCGAATCGTGCAGTCATAGGCGCCGTCGCCGCCCGCGCGCGAGCAGCCGATGCGTGCCGCGGGCGGCGCCGTGGCCGCATTCGCGAACAGCGGCGCGATCACGAGCGCAATCGCCACGATTGATTCGAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //