Array 1 1493501-1491970 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP035107.1 Ornithobacterium rhinotracheale strain FARPER-174b chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                 	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	================================================	===============================	==================
   1493500	    48	 100.0	    30	................................................	CTATTAAATCTACGAACCAAAAGCCATACT 	
   1493422	    48	  97.9	    30	..................................A.............	CGTAAGGTATGAGGAACCTACGCCGAACGA 	
   1493344	    48	 100.0	    30	................................................	CATGTCGCTGAAACGAGCAAAATCACCGAT 	
   1493266	    48	 100.0	    31	................................................	GGGCGGGGAATCATAATATAAGAAACTCCAG	
   1493187	    48	 100.0	    30	................................................	TTGATGAAGCTATAAAAGAGAATAAAAGAC 	
   1493109	    48	 100.0	    30	................................................	AATCATGAAGCAAAGTAATGATGAAGCTGT 	
   1493031	    48	 100.0	    30	................................................	CTTGATAGGTTACGCCTATATGCTTAATTT 	
   1492953	    48	 100.0	    30	................................................	AATCATGAAGCAAAGTAATGATGCAGTTGT 	
   1492875	    48	 100.0	    30	................................................	CAATCCTATATTATGCGGTTAGAATCCAAT 	
   1492797	    48	 100.0	    30	................................................	AATCAAGATATAGAGAATGTTATTTGGTTT 	
   1492719	    48	 100.0	    30	................................................	TGTTGAAGAATATCACATTGTAGAAGCTGA 	
   1492641	    48	 100.0	    30	................................................	TTCAGGAATTTTTTTACTGTAGTCAACAGT 	
   1492563	    48	 100.0	    30	................................................	GAACAATATCTATGTGATAAATACTTAGGT 	
   1492485	    48	 100.0	    30	................................................	CAATCGTGTGCGTGCGACTTCCTTGAAGGA 	
   1492407	    48	 100.0	    30	................................................	TTAATGAAGTGTTCTTTGCTTTCAGTATAA 	
   1492329	    48	 100.0	    30	................................................	CTTGAAAAAGTGTAATAATACCGTGCTAAC 	
   1492251	    48	 100.0	    30	................................................	AAGATTGGTTATATCTGTTAGGGTGGAAAC 	
   1492173	    48	 100.0	    30	................................................	AACCATAAATACCGCCTTTTTTCCAAATGC 	
   1492095	    48	 100.0	    30	................................................	ATTGTAGCTATTGTTGCAACAGCTGCAGCT 	
   1492017	    48	 100.0	     0	................................................	|                              	
==========	======	======	======	================================================	===============================	==================
        20	    48	  99.9	    30	GTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAAC	                               	       

# Left flank :   AAGTCTAAAACAATAATTTAATTTTTATTGTTTTAAAGTATTTATTTTTACTTGGTTTTCTTTGATTTAAATTTAGTCTTATCTGTGTAGGTATATGTCTTTTGGGCTACAGATAAGTAAAATCTTTTGTTCTGCATTGTACACTTGTCGTGTGTTACGGCGAACTTCCTTGATAAGCTTTTCGCTTTTTGTTTGTTTTTTTACCATGTTCTAAGTGGTTTTTGTAAAGTTAGTTTTTTATTTTTTTAACTATACTATTTTTAACCTAAACTGGTAAACTTTTTGCTGACGATTTACAATTGGTTTGGGCGTAAGCAAGGTAAGAAATCACGGTAAAACCGAGTGCCAATGCCCATTTTGAGGTTTGAAATCTTGTTTTCATTTTGATATGCTTTTAAGATGATGAAGCAAAGATAGTCCTCGCCCCAAAAGCACACAAAAATAACTTCCCGAACCGTTGTTTTACGCTGCTGAACGGTAGTTGGTGGGGTGAATAGAAG
# Right flank :  CTCAAAATTTAATCCACTGAAAAACAGTGGATTTTGCGATTTTATAGGATGGTGATTTTTATTCTTTTTTTGATTATCGGATATAAAATTTCTTATTTTTTTATTCTAAAACAACTCTAATTGTTGGTAAGTAGGCGGGGGATCTTCTCGTTTTTGTGAAAAGAAAATCTCAATATCGCCAAATTGTTTATCGGTAATATGCATAATCGCTACTTTTCCGTATTTGGGCAATATGGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTCGACTTGGACAATGGCGTACATAAATAGAAAACTGAAAAAGACTGAAGCCATCGTCTTCCAATCGCTTACGAAATAATTGAGCTGCTTTTCGCATGGCTTTGGTTTCAGTTGGAAGATCGTATAATACCATTACCCACATGACTCGATAGGCGTTAAATCGGTCGGAATTCATTAATTTCAGGCATTGAAAGTTGTCGTTTTTCTCCCGTATAGCATTTGTACAAGGAT

# Questionable array : NO	 Score: 5.76
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAAATTTTTACTATCTTTGCGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.20,-5.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.05,4.5   Confidence: MEDIUM] 

# Array family : II-C [Matched known repeat from this family],   
//