Array 1 433260-434385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEO01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE1148 SE1148_S9_L001_R1_001_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433260 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433321 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433382 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433443 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433504 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433565 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433626 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433687 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433748 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433809 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 433870 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 433931 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 433992 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434053 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434114 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434175 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434236 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434297 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434358 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450643-452306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEO01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE1148 SE1148_S9_L001_R1_001_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450643 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450704 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450765 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450826 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 450893 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 450954 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451015 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451076 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451137 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451198 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451259 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451320 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451381 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451442 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451503 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451564 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451625 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451686 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451747 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 451850 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451911 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 451972 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452033 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452094 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452155 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452216 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452277 29 96.6 0 A............................ | A [452303] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //