Array 1 116071-114840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZZF01000004.1 Enterobacter roggenkampii strain 35651 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116070 28 100.0 32 ............................ GCAAAATCAACATCGCCATTTCGAGGGCTGAG 116010 28 100.0 32 ............................ AGCGGAAAGCCACTCAAAGAGTACACACTAAA 115950 28 100.0 33 ............................ GGCTAGGCTCAGCAACGGTCGTCCGGCGTTCAT 115889 28 100.0 32 ............................ CGGCGCTGGCATCCTCCGCACCGGTGACGACT 115829 28 100.0 32 ............................ GCGTTATATCACGTGGTGGAAAATCTTCACAG 115769 28 100.0 32 ............................ GTTAGGACTGAATAAGATTTTCCGCGAAAAGA 115709 28 100.0 32 ............................ TGTATGACGACAGGAAGCTCACCCCGATAGAA 115649 28 100.0 32 ............................ GCGAGGGATGCAAAGACCGACTCACCTGATTT 115589 28 100.0 32 ............................ AGGTGGGGTGGCAGAACATGGACACCCCGAGT 115529 28 100.0 32 ............................ TACTTCGTCTAATAGACAAAAACGATCGAAAC 115469 28 100.0 32 ............................ CGTTTGTGGACCGCGGCAAATGCAGGTGCCAG 115409 28 100.0 32 ............................ CCGGCCCGGACCACCTCCCTGCAGAGCCCTGA 115349 28 100.0 33 ............................ TGGAGCCTTACGGGTTCACCAGTGCCCCGCTGG 115288 28 100.0 32 ............................ AAATTTCGGCGATTCTGGTTTGTAGAGCTGAA 115228 28 100.0 33 ............................ ATTCGACACCGCGATAGAGCGTGCCAGAAAGAA 115167 28 100.0 32 ............................ TGGAGCGGCTGCGCACTGCTCGCCACTCTTTT 115107 28 100.0 32 ............................ CATTGGGCACGGCCTTCATGGCATTTGACCCG 115047 28 100.0 32 ............................ GTCCGGGTTATCAGCCCTGCCTATTGATATCG 114987 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 114927 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [114902] 114867 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 21 28 97.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATAGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTCTGGTGGATGAAAAAGAGGGTGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAATTAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 126919-125569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZZF01000004.1 Enterobacter roggenkampii strain 35651 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126918 28 100.0 32 ............................ AGCATTTGTGGGATGCGCAGCTTCTGGTTTAG 126858 28 100.0 32 ............................ CCAGCGTTGGGATACCTTCGGTGATGGTGATG 126798 28 100.0 32 ............................ TTCTCGGTGATATCGTTTTCCCCAACAGAAAT 126738 28 100.0 32 ............................ CCGAGCTCCGCAAATCATTGCCGAAGGGGGCG 126678 28 100.0 32 ............................ TCTGTACGCCTGCCGGTTCGATATCTTCCAGT 126618 28 100.0 32 ............................ GATAATCAGCTGCCGCGTAACGCGGGCTGGAA 126558 28 100.0 32 ............................ CGGTTGATCAGTTCTGGATAAAACAAGGGATA 126498 28 100.0 32 ............................ ATCAGCACTTCTGAACAGTACGCGACGGCTTT 126438 28 100.0 32 ............................ TCGCGCTCATACTGCTTTTGTGCCGTTGTGCT 126378 28 100.0 32 ............................ AGCGGTAATTTTAATAGTCAGGCAGGAGTAAG 126318 28 100.0 32 ............................ AAAGCCGCTTGCTCTGCCGGGGTCATACCCGC 126258 28 100.0 32 ............................ AACCACCGGGCACGTATCGCTCAAGCTGCTGG 126198 28 100.0 32 ............................ TGTCGATACTGAGATGCAGTCGTCAGAATCCG 126138 28 100.0 32 ............................ GTTGTCGCGGCTGTGCTGCACCCTTATTTCGC 126078 28 100.0 32 ............................ AGGCTGCACAAGTTCCCCAGCAGCAGTCTCCC 126018 28 100.0 32 ............................ TGGCACAGAAGATTGATGGATACAGCTTCGAC 125958 28 100.0 32 ............................ TGCTCTGGCCACGCCAGGCTGTCTCCGTAGCA 125898 28 100.0 33 ............................ TATGCCTACGTATTCCGTACCTGGATACATAGA 125837 28 100.0 32 ............................ ACTATTTCCCAACCCTTGCGCACCTTGGTGAA 125777 28 100.0 32 ............................ TATGAGGATCGTGTTCGCGGGGCGGATCATCG 125717 28 100.0 32 ............................ ATTCACCAGATAAACGACATGCGCGCCATCTT 125657 28 100.0 33 ............................ AAGCGGGGTAGCAGAATATCGAGCCAGCGCAGT 125596 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGAGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : AAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGTGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTGACACAAATGGCAATGCGGGAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 142998-141946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZZF01000004.1 Enterobacter roggenkampii strain 35651 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142997 28 100.0 32 ............................ GTACAGGCAGAGGACGAAGGCATGGCGGGCAA 142937 28 100.0 33 ............................ CTGCGTGAGTTGACGAGTAAGGACATTATCGAC 142876 28 100.0 32 ............................ TGACGGCGCTGCTCCTCCTGTTTTGCTGCTGC 142816 28 100.0 32 ............................ ATCACCGTCACGCAGCATGCGGTTACCGATAA 142756 28 100.0 32 ............................ TGATTACCCTCCAGAAAATGGTTTACTGATGC 142696 28 100.0 33 ............................ ACTCGTACTACAACCACGGGCGGTTGTATTGCT 142635 28 100.0 32 ............................ AGACGGTCATCATCGTTAGCGAGCTTGCTGGC 142575 28 100.0 32 ............................ AGTCATTACGCGTGTTTCCAAACGTTCCGGTC 142515 28 100.0 32 ............................ ATCACCTTTTACCCCCCAGTCAGCAAAGTTAA 142455 28 100.0 33 ............................ GTTCGCCCCAGGGTAAGAGCCATCAGCACTGTT 142394 28 100.0 32 ............................ CAACTCCGCTATACCCGGACGCAACCGCTGTA 142334 28 100.0 33 ............................ ACAGTCGTTAGACATCTGGCACTTGTCGCAGAA 142273 28 100.0 32 ............................ ATGTCGCCTGTATCAAACGTCAGGGCATCCGC 142213 28 100.0 32 ............................ TAAGCCGGGTTTAGCAGATTTCAGCGCTACTC 142153 28 100.0 32 ............................ GCCAAGATATTCTGGGCGCTGGACACGAGAAT 142093 28 100.0 33 ............................ CAGGACAGCGTTGAATTTAAGAAGCTGGTCAAG 142032 27 96.4 32 ..............-............. GCTTCGAGCGATGCCAGCGCAATACGCGCCAA 141973 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTAAGTTTTAAGTTGTTGATTTCAAAACGGTGAATTGTTGGTGGTGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACTTCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //