Array 1 53502-54627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWN01000008.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_2876 NODE_8_length_155797_cov_2.12808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53502 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 53563 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 53624 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 53685 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 53746 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 53807 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 53868 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 53929 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 53990 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 54051 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 54112 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 54173 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 54234 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 54295 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 54356 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 54417 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 54478 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 54539 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 54600 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70798-72477 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWN01000008.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_2876 NODE_8_length_155797_cov_2.12808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70798 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 70859 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 70920 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 70981 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 71042 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 71103 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 71164 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 71225 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 71286 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 71347 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 71408 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 71469 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 71531 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 71593 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 71654 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 71715 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 71776 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 71837 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 71898 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 71959 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 72020 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 72082 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 72143 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 72204 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 72265 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 72326 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 72387 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 72448 29 93.1 0 A..............A............. | A [72474] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //